View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17728_low_3 (Length: 470)
Name: NF17728_low_3
Description: NF17728
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17728_low_3 |
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Alignment Details
Target: chr1 (Bit Score: 404; Significance: 0; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 404; E-Value: 0
Query Start/End: Original strand, 23 - 457
Target Start/End: Original strand, 44378750 - 44379184
Alignment:
| Q |
23 |
tgaggtgagaaaagaacatggcctcagtaatgtgatgagggtcatgtttgatattgcttccaatatcaaactcattttccaaatcatcaatcccatcctc |
122 |
Q |
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| T |
44378750 |
tgaggtgagaaaagaacatggcctcagtaatgtgatgagggtcatgtttgatattgcttccaatatcaaactcattttccaaatcatcaatcccatcctc |
44378849 |
T |
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| Q |
123 |
ttcttcgtcaccctcaactcttggactacctgattgttagaaaagcaaccctcattcaaaagcaaacagatatgaaaaatacaaacaaataacacgcggg |
222 |
Q |
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| T |
44378850 |
ttcttcgtcaccctcaactcttggactacctgattgttagaaaagcaaccctcattcaaaagcaaacagatatgaaaaatacaaacaaataacacgcggg |
44378949 |
T |
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| Q |
223 |
atttgatcagggagttcggccaaatgtgcctacgtctccaactgcagagtgccatacccaaatattggctctgctttgttagccaaaactttttcttcca |
322 |
Q |
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| T |
44378950 |
atttgatcagggagttcggccaaatgtgcctacgtctccaactgcagagtgccatacccaaatattggctctgctttgttagccaaaactttttcttcca |
44379049 |
T |
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| Q |
323 |
cttatatataacaaagtaaagnnnnnnnnngtcggttgaaggcttaccctttatgcgtttgtatttagttttgcagtgaggacaagcttggttcccttct |
422 |
Q |
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| T |
44379050 |
cttatatataacaaagtaaagaaaaaaaaagtcggttgaaggcttaccctttatgcgtttgtatttagttttgcagtgaggacaagcttggttcccttct |
44379149 |
T |
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| Q |
423 |
tgtctttcatactcatagcaaggtctacacacagg |
457 |
Q |
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| T |
44379150 |
cgtctttcatactcatagcaaggtctacacacagg |
44379184 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 177 - 271
Target Start/End: Original strand, 12478510 - 12478604
Alignment:
| Q |
177 |
ttcaaaagcaaacagatatgaaaaatacaaacaaataacacgcgggatttgatcagggagttcggccaaatgtgcctacgtctccaactgcagag |
271 |
Q |
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| T |
12478510 |
ttcaaaagaaaacagatacaaaacacacaaacgaagaagacacgatatttgatcacggtgtttggccaattgtgcctacgtctcctactgcagag |
12478604 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 176 - 217
Target Start/End: Original strand, 3917806 - 3917847
Alignment:
| Q |
176 |
attcaaaagcaaacagatatgaaaaatacaaacaaataacac |
217 |
Q |
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| T |
3917806 |
attcaaaagtaaacagatatgaaaagcacaaacaaataacac |
3917847 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 155 - 273
Target Start/End: Complemental strand, 29363244 - 29363125
Alignment:
| Q |
155 |
attgttagaaaagcaaccctcattcaaaagcaaacagatatgaaaaat-acaaacaaataacacgcgggatttgatcagggagttcggccaaatgtgcct |
253 |
Q |
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|||||||||| | ||||||| |||||||| |||| |||| |||||| ||||||| |||| || || |||||||||| | |||||||||||||| ||| |
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| T |
29363244 |
attgttagaacaacaaccctggttcaaaagtaaacggatacgaaaaaacacaaacagataaaacacgagatttgatcatagtgttcggccaaatgtacct |
29363145 |
T |
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| Q |
254 |
acgtctccaactgcagagtg |
273 |
Q |
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||||||| ||||||||||| |
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| T |
29363144 |
acgtctctgactgcagagtg |
29363125 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 197 - 271
Target Start/End: Original strand, 6522066 - 6522140
Alignment:
| Q |
197 |
aaaaatacaaacaaataacacgcgggatttgatcagggagttcggccaaatgtgcctacgtctccaactgcagag |
271 |
Q |
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|||||| || ||||| ||||| || |||||||||| || |||| ||||| |||||||||||||| ||||||||| |
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| T |
6522066 |
aaaaatgcagacaaagaacactcgagatttgatcatggggttcagccaattgtgcctacgtctcagactgcagag |
6522140 |
T |
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