View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17729_high_3 (Length: 251)
Name: NF17729_high_3
Description: NF17729
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17729_high_3 |
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| [»] chr4 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 162; Significance: 1e-86; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 162; E-Value: 1e-86
Query Start/End: Original strand, 18 - 251
Target Start/End: Original strand, 38210040 - 38210273
Alignment:
| Q |
18 |
atggatatcatttttcttttctataatagaatagagacatagtaatctattaattaataatagtttatagtttaaggaaaatgctatggtgcttattaag |
117 |
Q |
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| T |
38210040 |
atggatatcatttttcttttctataatagaatagagacatagtaatctattaattaataatagtttatagtttaaggaaaatgctatggtgcttattaag |
38210139 |
T |
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| Q |
118 |
caagtaaatatagtaataaaatattgaaatttgtgtagtcaattctttnnnnnnnnnnnnnnntgtccttttgatacaannnnnnnnnaaagatacaaac |
217 |
Q |
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| T |
38210140 |
caagtaaatatagtaataaaatattgaaatttgtgtagtcaattctttaaaaaattaaaaaaatgtccttttgatacaatttttttttaaagatacaaac |
38210239 |
T |
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| Q |
218 |
ctttttcttgtaggttccttcactggcatgacct |
251 |
Q |
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| T |
38210240 |
ctttttcttgtaggttccttcactggcatgacct |
38210273 |
T |
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Target: chr2 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 112 - 164
Target Start/End: Original strand, 20491502 - 20491554
Alignment:
| Q |
112 |
attaagcaagtaaatatagtaataaaatattgaaatttgtgtagtcaattctt |
164 |
Q |
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| T |
20491502 |
attaaggaaataaatatagtaatataatattggaatttgtgtagtcaactctt |
20491554 |
T |
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