View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF17729_low_1 (Length: 397)
Name: NF17729_low_1
Description: NF17729
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17729_low_1 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 299; Significance: 1e-168; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 299; E-Value: 1e-168
Query Start/End: Original strand, 25 - 381
Target Start/End: Complemental strand, 45207034 - 45206680
Alignment:
| Q |
25 |
tatttaacaa-tttaagttattatgttttaaatcaattttcattaaattgtactcacacaaataaatggataaaagtcaatacttgtctgtcagtatgaa |
123 |
Q |
| |
|
|||||||||| ||||| ||||||||||||||||||||||| ||||||||||||||||| |||||||| |||||||||| |||||||||||| ||||||| |
|
|
| T |
45207034 |
tatttaacaactttaaattattatgttttaaatcaattttaattaaattgtactcaca--aataaatgcataaaagtcattacttgtctgtc-gtatgaa |
45206938 |
T |
|
| Q |
124 |
ttataaatgcatgaaaatactaactcagagtgaaaatgtatatcattacaggacaaaacataacaatcgagcatagaagattgattgtttgatatgattt |
223 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |||||||||||| ||||||||||||| |
|
|
| T |
45206937 |
ttataaatgcatgaaaatactaactcagagtgaaaatgtatatcattacaagacaaaacataacaatcgagcagagaagattgattatttgatatgattt |
45206838 |
T |
|
| Q |
224 |
tgagaaagggtgaatttcaaacagaacagattcgattgcaaattggttcatcagcacacaaattaacccatacaggaccatgcagttgacttgcaatatt |
323 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
45206837 |
tgagaaagggtgaatttcaaacagaacagattcgattgcaaattggttcatcaacacacaaattaacccatacaggaccatgcagttgacttgcaatatt |
45206738 |
T |
|
| Q |
324 |
gtcaactgccaccacattggcctagaagagcaacacttagcatgttaataaatggttg |
381 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
45206737 |
gtcaactgccaccacattggcctagaagagcaacacttagcatgttaataaatggttg |
45206680 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 120; E-Value: 3e-61
Query Start/End: Original strand, 152 - 378
Target Start/End: Complemental strand, 45203424 - 45203200
Alignment:
| Q |
152 |
agtgaaaatgtatatcattacaggacaaaacataacaatcgagcatagaagattgattgtttgatatgattttgagaaagggtgaatttcaaacagaaca |
251 |
Q |
| |
|
|||||||||||||||||||||| |||||||||||||||||||| |||||||||||| ||||| || ||||||||||| ||| ||| |||| ||||| |
|
|
| T |
45203424 |
agtgaaaatgtatatcattacaagacaaaacataacaatcgagaatagaagattgaaaaattgat--gagtttgagaaaggttgattttgaaactgaaca |
45203327 |
T |
|
| Q |
252 |
gattcgattgcaaattggttcatcagcacacaaattaacccatacaggaccatgcagttgacttgcaatattgtcaactgccaccacattggcctagaag |
351 |
Q |
| |
|
|||||||||||||||||||||||| |||||||| |||| |||||||||||||||||||| | ||||||||||||||||||||| ||||||||||| |
|
|
| T |
45203326 |
aattcgattgcaaattggttcatcaacacacaaactaactatcgcaggaccatgcagttgacttactatattgtcaactgccaccacaatggcctagaag |
45203227 |
T |
|
| Q |
352 |
agcaacacttagcatgttaataaatgg |
378 |
Q |
| |
|
||||||||||||||||| ||| ||||| |
|
|
| T |
45203226 |
agcaacacttagcatgtaaatgaatgg |
45203200 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 222 - 267
Target Start/End: Original strand, 45211799 - 45211844
Alignment:
| Q |
222 |
tttgagaaagggtgaatttcaaacagaacagattcgattgcaaatt |
267 |
Q |
| |
|
||||||||| ||||||||| |||| |||||||||||||||||||| |
|
|
| T |
45211799 |
tttgagaaatggtgaatttgaaacccaacagattcgattgcaaatt |
45211844 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 296 - 328
Target Start/End: Original strand, 45211867 - 45211899
Alignment:
| Q |
296 |
caggaccatgcagttgacttgcaatattgtcaa |
328 |
Q |
| |
|
|||||||||||||||||||||| |||||||||| |
|
|
| T |
45211867 |
caggaccatgcagttgacttgccatattgtcaa |
45211899 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 67; Significance: 1e-29; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 295 - 377
Target Start/End: Original strand, 21466073 - 21466155
Alignment:
| Q |
295 |
acaggaccatgcagttgacttgcaatattgtcaactgccaccacattggcctagaagagcaacacttagcatgttaataaatg |
377 |
Q |
| |
|
|||||||| ||||||||||||||||||||||||||||||||||||||| |||||||||||| |||||||||||||||||||| |
|
|
| T |
21466073 |
acaggaccttgcagttgacttgcaatattgtcaactgccaccacattgttctagaagagcaatacttagcatgttaataaatg |
21466155 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University