View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17729_low_4 (Length: 295)

Name: NF17729_low_4
Description: NF17729
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17729_low_4
NF17729_low_4
[»] chr5 (3 HSPs)
chr5 (21-281)||(25072071-25072325)
chr5 (21-281)||(25130042-25130296)
chr5 (230-273)||(19537709-19537752)
[»] chr7 (2 HSPs)
chr7 (85-281)||(43941207-43941403)
chr7 (19-64)||(43941093-43941138)
[»] scaffold0074 (2 HSPs)
scaffold0074 (85-281)||(17949-18145)
scaffold0074 (19-59)||(17831-17871)
[»] chr8 (3 HSPs)
chr8 (80-281)||(5659270-5659471)
chr8 (21-64)||(5659066-5659109)
chr8 (230-273)||(18561168-18561211)
[»] chr3 (3 HSPs)
chr3 (85-281)||(13205644-13205840)
chr3 (93-162)||(21447655-21447724)
chr3 (19-72)||(13205871-13205924)
[»] chr1 (3 HSPs)
chr1 (85-281)||(20574428-20574623)
chr1 (19-72)||(27305421-27305474)
chr1 (231-273)||(18386323-18386365)
[»] chr4 (1 HSPs)
chr4 (19-72)||(43301892-43301945)
[»] chr2 (1 HSPs)
chr2 (230-273)||(26215485-26215528)
[»] chr6 (1 HSPs)
chr6 (21-64)||(20623661-20623704)


Alignment Details
Target: chr5 (Bit Score: 179; Significance: 1e-96; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 179; E-Value: 1e-96
Query Start/End: Original strand, 21 - 281
Target Start/End: Original strand, 25072071 - 25072325
Alignment:
Q  21 ttccgtcactctccgtctcacttccttctcaggttctctctctcgctttaccnnnnnnnccgtaaatttgtgtcgtttgtgattcatggattcataatca 120  Q
    |||||||||||||||||||||||||||||||||| |||||||||||||||||       | || ||||||| ||| ||||||||||||||||||||||||    
T  25072071 ttccgtcactctccgtctcacttccttctcaggtcctctctctcgctttacctt-----ctgtcaatttgt-tcgcttgtgattcatggattcataatca 25072164  T
Q  121 tgtaaattgaattgaaaataatgtttattattgatatattttcaattcaaaacccaatctggaacctcaaacccatggattcctcaatctttgactcaaa 220  Q
    ||||||||||||||||||||||||||||||||||||||||||  ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||    
T  25072165 tgtaaattgaattgaaaataatgtttattattgatatatttttgattcaaaacccaatctggaacctcaaatccatggattcctcaatctttgactcaaa 25072264  T
Q  221 cccatctttgtttgctgattctgaaatacccaaaccctcatctttgtattatttttctttt 281  Q
     |||| || ||||||||||||||||||||||||||||||||||| |||||||| |||||||    
T  25072265 accattttcgtttgctgattctgaaatacccaaaccctcatcttcgtattattcttctttt 25072325  T

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Target: chr5; HSP #2
Raw Score: 179; E-Value: 1e-96
Query Start/End: Original strand, 21 - 281
Target Start/End: Original strand, 25130042 - 25130296
Alignment:
Q  21 ttccgtcactctccgtctcacttccttctcaggttctctctctcgctttaccnnnnnnnccgtaaatttgtgtcgtttgtgattcatggattcataatca 120  Q
    |||||||||||||||||||||||||||||||||| |||||||||||||||||       | || ||||||| ||| ||||||||||||||||||||||||    
T  25130042 ttccgtcactctccgtctcacttccttctcaggtcctctctctcgctttacctt-----ctgtcaatttgt-tcgcttgtgattcatggattcataatca 25130135  T
Q  121 tgtaaattgaattgaaaataatgtttattattgatatattttcaattcaaaacccaatctggaacctcaaacccatggattcctcaatctttgactcaaa 220  Q
    ||||||||||||||||||||||||||||||||||||||||||  ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||    
T  25130136 tgtaaattgaattgaaaataatgtttattattgatatatttttgattcaaaacccaatctggaacctcaaatccatggattcctcaatctttgactcaaa 25130235  T
Q  221 cccatctttgtttgctgattctgaaatacccaaaccctcatctttgtattatttttctttt 281  Q
     |||| || ||||||||||||||||||||||||||||||||||| |||||||| |||||||    
T  25130236 accattttcgtttgctgattctgaaatacccaaaccctcatcttcgtattattcttctttt 25130296  T

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Target: chr5; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 230 - 273
Target Start/End: Original strand, 19537709 - 19537752
Alignment:
Q  230 gtttgctgattctgaaatacccaaaccctcatctttgtattatt 273  Q
    ||||||| | ||||||||||||||||||||||||||||||||||    
T  19537709 gtttgcttaatctgaaatacccaaaccctcatctttgtattatt 19537752  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 169; Significance: 1e-90; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 169; E-Value: 1e-90
Query Start/End: Original strand, 85 - 281
Target Start/End: Original strand, 43941207 - 43941403
Alignment:
Q  85 aatttgtgtcgtttgtgattcatggattcataatcatgtaaattgaattgaaaataatgtttattattgatatattttcaattcaaaacccaatctggaa 184  Q
    ||||||||||||||| |||||||||||| ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |||||||||||    
T  43941207 aatttgtgtcgtttgagattcatggatttataatcatgtaaattgaattgaaaatattgtttattattgatatattttcaattcaaaatccaatctggaa 43941306  T
Q  185 cctcaaacccatggattcctcaatctttgactcaaacccatctttgtttgctgattctgaaatacccaaaccctcatctttgtattatttttctttt 281  Q
    ||||||||||||||||||||||||||||||||||||||||||||  ||||||||||||||||||||||||||||||||||||||||||| |||||||    
T  43941307 cctcaaacccatggattcctcaatctttgactcaaacccatcttcatttgctgattctgaaatacccaaaccctcatctttgtattattcttctttt 43941403  T

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Target: chr7; HSP #2
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 19 - 64
Target Start/End: Original strand, 43941093 - 43941138
Alignment:
Q  19 ccttccgtcactctccgtctcacttccttctcaggttctctctctc 64  Q
    |||||||||||||||||||||||||||||||||||| |||||||||    
T  43941093 ccttccgtcactctccgtctcacttccttctcaggtcctctctctc 43941138  T

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Target: scaffold0074 (Bit Score: 161; Significance: 7e-86; HSPs: 2)
Name: scaffold0074
Description:

Target: scaffold0074; HSP #1
Raw Score: 161; E-Value: 7e-86
Query Start/End: Original strand, 85 - 281
Target Start/End: Original strand, 17949 - 18145
Alignment:
Q  85 aatttgtgtcgtttgtgattcatggattcataatcatgtaaattgaattgaaaataatgtttattattgatatattttcaattcaaaacccaatctggaa 184  Q
    ||||||||||||||| |||||||||||| ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |||||||||||    
T  17949 aatttgtgtcgtttgagattcatggatttataatcatgtaaattgaattgaaaatattgtttattattgatatattttcaattcaaaatccaatctggaa 18048  T
Q  185 cctcaaacccatggattcctcaatctttgactcaaacccatctttgtttgctgattctgaaatacccaaaccctcatctttgtattatttttctttt 281  Q
    ||||||| ||||||||||||||||||||||||||||||||||||  |||||||||| |||||||||||||||||||||||||||||||| |||||||    
T  18049 cctcaaatccatggattcctcaatctttgactcaaacccatcttcatttgctgattttgaaatacccaaaccctcatctttgtattattcttctttt 18145  T

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Target: scaffold0074; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 19 - 59
Target Start/End: Original strand, 17831 - 17871
Alignment:
Q  19 ccttccgtcactctccgtctcacttccttctcaggttctct 59  Q
    ||||||| ||||||| |||||||||||||||||||| ||||    
T  17831 ccttccgacactctctgtctcacttccttctcaggtcctct 17871  T

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Target: chr8 (Bit Score: 158; Significance: 4e-84; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 158; E-Value: 4e-84
Query Start/End: Original strand, 80 - 281
Target Start/End: Original strand, 5659270 - 5659471
Alignment:
Q  80 ccgtaaatttgtgtcgtttgtgattcatggattcataatcatgtaaattgaattgaaaataatgtttattattgatatattttcaattcaaaacccaatc 179  Q
    |||| ||||||||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |||  ||||||||||    
T  5659270 ccgtcaatttgtgtcgattgtgattaatggattcataatcatgtaaattgaattgaaaataatgtttattattgatgtattttcgattataaacccaatc 5659369  T
Q  180 tggaacctcaaacccatggattcctcaatctttgactcaaacccatctttgtttgctgattctgaaatacccaaaccctcatctttgtattatttttctt 279  Q
    |||||||| ||||||||||||| |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |||||    
T  5659370 tggaacctgaaacccatggatttctcaatctttgactcaaacccatctttgtttgctgattctaaaatacccaaaccctcatctttgtattattcttctt 5659469  T
Q  280 tt 281  Q
    ||    
T  5659470 tt 5659471  T

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Target: chr8; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 21 - 64
Target Start/End: Original strand, 5659066 - 5659109
Alignment:
Q  21 ttccgtcactctccgtctcacttccttctcaggttctctctctc 64  Q
    ||||||||||| |||||||||||||||||||||| |||||||||    
T  5659066 ttccgtcactcgccgtctcacttccttctcaggtcctctctctc 5659109  T

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Target: chr8; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 230 - 273
Target Start/End: Complemental strand, 18561211 - 18561168
Alignment:
Q  230 gtttgctgattctgaaatacccaaaccctcatctttgtattatt 273  Q
    ||||||| | ||||||||||||||||||||||||||||||||||    
T  18561211 gtttgcttagtctgaaatacccaaaccctcatctttgtattatt 18561168  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 157; Significance: 2e-83; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 157; E-Value: 2e-83
Query Start/End: Original strand, 85 - 281
Target Start/End: Complemental strand, 13205840 - 13205644
Alignment:
Q  85 aatttgtgtcgtttgtgattcatggattcataatcatgtaaattgaattgaaaataatgtttattattgatatattttcaattcaaaacccaatctggaa 184  Q
    ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |||||    
T  13205840 aatttgtgtcgtttgtgattcatggattcataatcttgtaaattgaattgaaaataatgtttattattgatatattttcgattcaaaacccaatatggaa 13205741  T
Q  185 cctcaaacccatggattcctcaatctttgactcaaacccatctttgtttgctgattctgaaatacccaaaccctcatctttgtattatttttctttt 281  Q
    ||||||||| |||||||||||||||||||||||||||||||||| ||||| |||||||||||||   |||||||||||||||||||||| |||||||    
T  13205740 cctcaaacctatggattcctcaatctttgactcaaacccatcttcgtttgatgattctgaaataattaaaccctcatctttgtattattcttctttt 13205644  T

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Target: chr3; HSP #2
Raw Score: 62; E-Value: 8e-27
Query Start/End: Original strand, 93 - 162
Target Start/End: Complemental strand, 21447724 - 21447655
Alignment:
Q  93 tcgtttgtgattcatggattcataatcatgtaaattgaattgaaaataatgtttattattgatatatttt 162  Q
    ||||||||||||||||||||||||| ||||||||||||||||||| ||||||||||||||||||||||||    
T  21447724 tcgtttgtgattcatggattcataaccatgtaaattgaattgaaactaatgtttattattgatatatttt 21447655  T

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Target: chr3; HSP #3
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 19 - 72
Target Start/End: Complemental strand, 13205924 - 13205871
Alignment:
Q  19 ccttccgtcactctccgtctcacttccttctcaggttctctctctcgctttacc 72  Q
    |||||||||||||||||||||||||||||||||||| |||||||||||||||||    
T  13205924 ccttccgtcactctccgtctcacttccttctcaggtcctctctctcgctttacc 13205871  T

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Target: chr1 (Bit Score: 145; Significance: 2e-76; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 145; E-Value: 2e-76
Query Start/End: Original strand, 85 - 281
Target Start/End: Complemental strand, 20574623 - 20574428
Alignment:
Q  85 aatttgtgtcgtttgtgattcatggattcataatcatgtaaattgaattgaaaataatgtttattattgatatattttcaattcaaaacccaatctggaa 184  Q
    |||||||||  ||||||||||||| ||||||||||||||||||||||||||||||||||||||| |||||||||||||| |||||||||| ||||| |||    
T  20574623 aatttgtgttctttgtgattcatgcattcataatcatgtaaattgaattgaaaataatgtttatgattgatatattttcgattcaaaacctaatctagaa 20574524  T
Q  185 cctcaaacccatggattcctcaatctttgactcaaacccatctttgtttgctgattctgaaatacccaaaccctcatctttgtattatttttctttt 281  Q
    |||||||||||||||||||||||| |||||||||||||||||||  ||||||||||||||||||||||||||||||| ||||||||||| |||||||    
T  20574523 cctcaaacccatggattcctcaatttttgactcaaacccatcttcatttgctgattctgaaatacccaaaccctcat-tttgtattattcttctttt 20574428  T

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Target: chr1; HSP #2
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 19 - 72
Target Start/End: Complemental strand, 27305474 - 27305421
Alignment:
Q  19 ccttccgtcactctccgtctcacttccttctcaggttctctctctcgctttacc 72  Q
    |||||||||||||||||||||||||||||||||||| |||||||||||||||||    
T  27305474 ccttccgtcactctccgtctcacttccttctcaggtcctctctctcgctttacc 27305421  T

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Target: chr1; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 231 - 273
Target Start/End: Original strand, 18386323 - 18386365
Alignment:
Q  231 tttgctgattctgaaatacccaaaccctcatctttgtattatt 273  Q
    |||||| | ||||||||||||||||||||||||||||||||||    
T  18386323 tttgcttaatctgaaatacccaaaccctcatctttgtattatt 18386365  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 46; Significance: 3e-17; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 19 - 72
Target Start/End: Complemental strand, 43301945 - 43301892
Alignment:
Q  19 ccttccgtcactctccgtctcacttccttctcaggttctctctctcgctttacc 72  Q
    |||||||||||||||| ||||||||||||||||||| |||||||||||||||||    
T  43301945 ccttccgtcactctccatctcacttccttctcaggtcctctctctcgctttacc 43301892  T

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Target: chr2 (Bit Score: 36; Significance: 0.00000000003; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 230 - 273
Target Start/End: Original strand, 26215485 - 26215528
Alignment:
Q  230 gtttgctgattctgaaatacccaaaccctcatctttgtattatt 273  Q
    ||||||| | ||||||||||||||||||||||||||||||||||    
T  26215485 gtttgcttaatctgaaatacccaaaccctcatctttgtattatt 26215528  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 32; Significance: 0.000000006; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 21 - 64
Target Start/End: Original strand, 20623661 - 20623704
Alignment:
Q  21 ttccgtcactctccgtctcacttccttctcaggttctctctctc 64  Q
    |||||||||||| | ||||||||||||||||||| |||||||||    
T  20623661 ttccgtcactctacatctcacttccttctcaggtcctctctctc 20623704  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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