View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17729_low_7 (Length: 231)
Name: NF17729_low_7
Description: NF17729
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17729_low_7 |
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| [»] chr2 (6 HSPs) |
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| [»] chr6 (1 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 194; Significance: 1e-105; HSPs: 6)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 194; E-Value: 1e-105
Query Start/End: Original strand, 18 - 231
Target Start/End: Complemental strand, 32309302 - 32309089
Alignment:
| Q |
18 |
ctctgattctttgattgaaataaaatggaaaagtattggctgctaaaatgactgaacgaaaagaagtatgagagaaagaagaagatgaagttgtttgtgt |
117 |
Q |
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||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32309302 |
ctctgattctttgattgaaatcaaatggaaaagtattggctgctaaaatgactgaacgaaaagaagtatgagagaaagaagaagatgaagttgtttgtgt |
32309203 |
T |
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| Q |
118 |
tatggtgttttccggttcaggttctcctattgggtttctgagagagggaagaacaggaaggaatacaatgaatgcaactatgatccatgggttgaagatg |
217 |
Q |
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|||||||||||| ||||||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32309202 |
tatggtgttttctggttcaggttctcctcttgggtttctgagagagacaagaacaggaaggaatacaatgaatgcaactatgatccatgggttgaagatg |
32309103 |
T |
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| Q |
218 |
aagaatctcctcat |
231 |
Q |
| |
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|||||||||||||| |
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| T |
32309102 |
aagaatctcctcat |
32309089 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 194; E-Value: 1e-105
Query Start/End: Original strand, 18 - 231
Target Start/End: Original strand, 32565533 - 32565746
Alignment:
| Q |
18 |
ctctgattctttgattgaaataaaatggaaaagtattggctgctaaaatgactgaacgaaaagaagtatgagagaaagaagaagatgaagttgtttgtgt |
117 |
Q |
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||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32565533 |
ctctgattctttgattgaaatcaaatggaaaagtattggctgctaaaatgactgaacgaaaagaagtatgagagaaagaagaagatgaagttgtttgtgt |
32565632 |
T |
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| Q |
118 |
tatggtgttttccggttcaggttctcctattgggtttctgagagagggaagaacaggaaggaatacaatgaatgcaactatgatccatgggttgaagatg |
217 |
Q |
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| T |
32565633 |
tatggtgttttctggttcaggttctcctcttgggtttctgagagagacaagaacaggaaggaatacaatgaatgcaactatgatccatgggttgaagatg |
32565732 |
T |
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| Q |
218 |
aagaatctcctcat |
231 |
Q |
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|||||||||||||| |
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| T |
32565733 |
aagaatctcctcat |
32565746 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 194; E-Value: 1e-105
Query Start/End: Original strand, 18 - 231
Target Start/End: Original strand, 32799764 - 32799977
Alignment:
| Q |
18 |
ctctgattctttgattgaaataaaatggaaaagtattggctgctaaaatgactgaacgaaaagaagtatgagagaaagaagaagatgaagttgtttgtgt |
117 |
Q |
| |
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||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32799764 |
ctctgattctttgattgaaatcaaatggaaaagtattggctgctaaaatgactgaacgaaaagaagtatgagagaaagaagaagatgaagttgtttgtgt |
32799863 |
T |
|
| Q |
118 |
tatggtgttttccggttcaggttctcctattgggtttctgagagagggaagaacaggaaggaatacaatgaatgcaactatgatccatgggttgaagatg |
217 |
Q |
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|||||||||||| ||||||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||| |||||||||||||||| |
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| T |
32799864 |
tatggtgttttctggttcaggttctcctcttgggtttctgagagagagaagaacaggaaggaatacaatgaatgcaactatgaaccatgggttgaagatg |
32799963 |
T |
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| Q |
218 |
aagaatctcctcat |
231 |
Q |
| |
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|||||||||||||| |
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| T |
32799964 |
aagaatctcctcat |
32799977 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 194; E-Value: 1e-105
Query Start/End: Original strand, 18 - 231
Target Start/End: Original strand, 32806718 - 32806931
Alignment:
| Q |
18 |
ctctgattctttgattgaaataaaatggaaaagtattggctgctaaaatgactgaacgaaaagaagtatgagagaaagaagaagatgaagttgtttgtgt |
117 |
Q |
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||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
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| T |
32806718 |
ctctgattctttgattgaaatcaaatggaaaagtattggctgctaaaatgactgaacgaaaagaagtatgagagaaagaagaagatgaaattgtttgtgt |
32806817 |
T |
|
| Q |
118 |
tatggtgttttccggttcaggttctcctattgggtttctgagagagggaagaacaggaaggaatacaatgaatgcaactatgatccatgggttgaagatg |
217 |
Q |
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|||||||||||| ||||||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32806818 |
tatggtgttttctggttcagattctcctcttgggtttctgagagagggaagaacaggaaggaatacaatgaatgcaactatgatccatgggttgaagatg |
32806917 |
T |
|
| Q |
218 |
aagaatctcctcat |
231 |
Q |
| |
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|||||||||||||| |
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| T |
32806918 |
aagaatctcctcat |
32806931 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 194; E-Value: 1e-105
Query Start/End: Original strand, 18 - 231
Target Start/End: Original strand, 32815155 - 32815368
Alignment:
| Q |
18 |
ctctgattctttgattgaaataaaatggaaaagtattggctgctaaaatgactgaacgaaaagaagtatgagagaaagaagaagatgaagttgtttgtgt |
117 |
Q |
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||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32815155 |
ctctgattctttgattgaaatcaaatggaaaagtattggctgctaaaatgactgaacgaaaagaagtatgagagaaagaagaagatgaagttgtttgtgt |
32815254 |
T |
|
| Q |
118 |
tatggtgttttccggttcaggttctcctattgggtttctgagagagggaagaacaggaaggaatacaatgaatgcaactatgatccatgggttgaagatg |
217 |
Q |
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|||||||||||| ||||||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32815255 |
tatggtgttttctggttcaggttctcctcttgggtttctgagagagacaagaacaggaaggaatacaatgaatgcaactatgatccatgggttgaagatg |
32815354 |
T |
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| Q |
218 |
aagaatctcctcat |
231 |
Q |
| |
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|||||||||||||| |
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| T |
32815355 |
aagaatctcctcat |
32815368 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #6
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 153 - 231
Target Start/End: Original strand, 28215852 - 28215930
Alignment:
| Q |
153 |
ttctgagagagggaagaacaggaaggaatacaatgaatgcaactatgatccatgggttgaagatgaagaatctcctcat |
231 |
Q |
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||||||||||| ||||||||||||||| | ||||||||||||||| |||||||| |||||||||||||||||||||||| |
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| T |
28215852 |
ttctgagagagagaagaacaggaaggactgcaatgaatgcaactaagatccatgtgttgaagatgaagaatctcctcat |
28215930 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 115; Significance: 1e-58; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 115; E-Value: 1e-58
Query Start/End: Original strand, 18 - 231
Target Start/End: Complemental strand, 301448 - 301243
Alignment:
| Q |
18 |
ctctgattctttgattgaaataaaatggaaaagtattggctgctaaaatgactgaacgaaaagaagtatgagagaaagaagaagatgaagttgtttgtgt |
117 |
Q |
| |
|
||||||||||||||||||||| ||||||||||||||||||| || ||||||||| ||||| ||||||||||||||||| ||||||||||||||| |
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| T |
301448 |
ctctgattctttgattgaaatcaaatggaaaagtattggct---aacgtgactgaaccaaaag--gtatgagagaaagaaga---tgaagttgtttgtgt |
301357 |
T |
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| Q |
118 |
tatggtgttttccggttcaggttctcctattgggtttctgagagagggaagaacaggaaggaatacaatgaatgcaactatgatccatgggttgaagatg |
217 |
Q |
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|||||||||||| ||||| | ||||||| ||||||||||| |||| ||||||| ||||||| |||||||||||||||||||| |||||||||||||||| |
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| T |
301356 |
tatggtgttttcgggttctgattctcctcgtgggtttctgaaagagagaagaacgggaaggactacaatgaatgcaactatgaaccatgggttgaagatg |
301257 |
T |
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| Q |
218 |
aagaatctcctcat |
231 |
Q |
| |
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|||||||| ||||| |
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| T |
301256 |
aagaatcttctcat |
301243 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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