View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF17729_low_8 (Length: 212)
Name: NF17729_low_8
Description: NF17729
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17729_low_8 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 181; Significance: 6e-98; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 181; E-Value: 6e-98
Query Start/End: Original strand, 16 - 196
Target Start/End: Original strand, 43144508 - 43144688
Alignment:
| Q |
16 |
attcttgatggcaatgattcatcttgcagcagtatttagattttatagtaagggatactcacttgaagaaatggcctattctgctgctggtgagcacaat |
115 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
43144508 |
attcttgatggcaatgattcatcttgcagcagtatttagattttatagtaagggatactcacttgaagaaatggcctattctgctgctggtgagcacaat |
43144607 |
T |
|
| Q |
116 |
aatttttctttttaggtaggttgttagtgttgattcatgtgaacattttggcagaattctgatgctgaattgggttatttt |
196 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
43144608 |
aatttttctttttaggtaggttgttagtgttgattcatgtgaacattttggcagaattctgatgctgaattgggttatttt |
43144688 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 108; E-Value: 2e-54
Query Start/End: Original strand, 26 - 185
Target Start/End: Original strand, 43156879 - 43157038
Alignment:
| Q |
26 |
gcaatgattcatcttgcagcagtatttagattttatagtaagggatactcacttgaagaaatggcctattctgctgctggtgagcacaataatttttctt |
125 |
Q |
| |
|
|||| ||||||||||||||||| |||||||||||||||||| ||||| ||||||||||||| ||||||| || ||||||||||||||| || |||| ||| |
|
|
| T |
43156879 |
gcaacgattcatcttgcagcagcatttagattttatagtaacggatattcacttgaagaaacggcctatacttctgctggtgagcacactacttttcctt |
43156978 |
T |
|
| Q |
126 |
tttaggtaggttgttagtgttgattcatgtgaacattttggcagaattctgatgctgaat |
185 |
Q |
| |
|
||| ||||||||||||||||||||||||||||||||||||| || ||||||||||||||| |
|
|
| T |
43156979 |
ttttggtaggttgttagtgttgattcatgtgaacattttgggaggattctgatgctgaat |
43157038 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 35; Significance: 0.00000000007; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 64 - 146
Target Start/End: Complemental strand, 33833073 - 33832991
Alignment:
| Q |
64 |
taagggatactcacttgaagaaatggcctattctgctgctggtgagcacaataatttttctttttaggtaggttgttagtgtt |
146 |
Q |
| |
|
|||||| |||||| | || ||||||||||| || ||| ||||||| ||| | ||||||||||||||||||||||||||||| |
|
|
| T |
33833073 |
taagggttactcagtcgaggaaatggcctacacttctggtggtgagaacacaactttttctttttaggtaggttgttagtgtt |
33832991 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University