View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF1772_high_3 (Length: 391)
Name: NF1772_high_3
Description: NF1772
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1772_high_3 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 252; Significance: 1e-140; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 252; E-Value: 1e-140
Query Start/End: Original strand, 40 - 359
Target Start/End: Complemental strand, 39836767 - 39836450
Alignment:
| Q |
40 |
tccattattataggaaaatgatgagatggcatgggg-agtgatgagtaagggggagccagaccacatggagtggatgagtcaaattgcaaattaatgaga |
138 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| |||||||||||||||| ||||||||||||| |||||||||||||||||||||||||||||||| |
|
|
| T |
39836767 |
tccattattataggaaaatgatgagatggcatgggggagtgatgagtaagggg-agccagaccacattgagtggatgagtcaaattgcaaattaatgaga |
39836669 |
T |
|
| Q |
139 |
gttttagggaccactagtaaagggagtgataacgaaatatgatggtttgacgaggaaaatatacatgtgttggcataagtgatggagcaatgaattgaaa |
238 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
|
|
| T |
39836668 |
gttttagggaccactagtaaagggagtgataacgaaatttgatggtttgacgaggaaaatatatatgtgttggcataagtgatggagcaatgaattgaaa |
39836569 |
T |
|
| Q |
239 |
ttgtgatgatcatgaacaaagttaattatgatat----acttactatatacatatcatgaaatggtttgatgacgaaaatatgtgttagaggtacgaatt |
334 |
Q |
| |
|
||||||||||||||||||||| ||||||||| ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
39836568 |
ttgtgatgatcatgaacaaag----ttatgatatactaacttactatatac--atcatgaaatggtttgatgacgaaaatatgtgttagaggtacgaatt |
39836475 |
T |
|
| Q |
335 |
gaaattttgatgatcacaaacaaag |
359 |
Q |
| |
|
||||||||||||||||||||||||| |
|
|
| T |
39836474 |
gaaattttgatgatcacaaacaaag |
39836450 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University