View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1772_high_6 (Length: 341)
Name: NF1772_high_6
Description: NF1772
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1772_high_6 |
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Alignment Details
Target: chr4 (Bit Score: 321; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 321; E-Value: 0
Query Start/End: Original strand, 1 - 325
Target Start/End: Original strand, 41706040 - 41706364
Alignment:
| Q |
1 |
aaaaacagagcaatggtgatgaagttgttgagtttgtttatacttcaatgcttgaaaatccaaaacatccttatttttacactgttggcttgaaaggaat |
100 |
Q |
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| T |
41706040 |
aaaaacagagcaatggtgatgaagttgttgagtttgtttatacttcaatgcttgaaaatccaaaacattcttatttttacactgttggcttgaaaggaat |
41706139 |
T |
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| Q |
101 |
ctctgtcggaaaaaagaccgttccagcaccaaagattttacggagggtgaataagaaaggtgacggcggtgtagtagtggattccggcacgacatttacg |
200 |
Q |
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| T |
41706140 |
ctctgtcggaaaaaagaccgttccagcaccaaagattttacggagggtgaataagaaaggtgacggcggtgtagtagtggattccggcacgacatttacg |
41706239 |
T |
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| Q |
201 |
atgttaccggagaaattttataactcggtggtggaagggtttgaccgtcgtgctaggaaatctaaccggagggcgcctgagattgaacagaaaactgggc |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41706240 |
atgttaccggagaaattttataactcggtggtggaagggtttgaccgtcgtgctaggaaatctaaccggagggcgcctgagattgaacagaaaactgggc |
41706339 |
T |
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| Q |
301 |
tttcaccatgttattatttgaacac |
325 |
Q |
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||||||||||||||||||||||||| |
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| T |
41706340 |
tttcaccatgttattatttgaacac |
41706364 |
T |
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