View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1772_low_11 (Length: 310)
Name: NF1772_low_11
Description: NF1772
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1772_low_11 |
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Alignment Details
Target: chr1 (Bit Score: 250; Significance: 1e-139; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 250; E-Value: 1e-139
Query Start/End: Original strand, 7 - 301
Target Start/End: Complemental strand, 5757477 - 5757165
Alignment:
| Q |
7 |
cttgttgtatccaaaatcagttgtggcatgttgttgcagaaattatccttcacattgcacaaataagagttgttaatttaaataaactaatgaatgaagt |
106 |
Q |
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| T |
5757477 |
cttgttgtatccaaaatcagttgtggcatgttgttgcagaaattatccttcacattgcacaaataagagttgttaatttaaataaactaatgaatgaagt |
5757378 |
T |
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| Q |
107 |
aataaatattattatgtattatgaagtgttaaagtatccaacatgaaccttaatag------------------aggtatcaaatgaagctatattggtc |
188 |
Q |
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| T |
5757377 |
aataaatattattatgtattatgaagtgttaaagtatccaacatgaaccttaatagaggtttgaaaacttgatgaggtatcaaatgaagctatattggtc |
5757278 |
T |
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| Q |
189 |
gccgagggtaagataacagattgatttgagatgctgcattgttctggaaaactaaaagcttgccgtgcgaaatattcattgttagtaggcggggtaattg |
288 |
Q |
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| T |
5757277 |
gacgagggtaagataacagattgatttgagatgctgcattgttctggaaaactaaaagcttgccgtgcgaaatattcattgttagtaggcggggtaattg |
5757178 |
T |
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| Q |
289 |
cattgttagaatt |
301 |
Q |
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| T |
5757177 |
cattgttagaatt |
5757165 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 243; E-Value: 1e-135
Query Start/End: Original strand, 7 - 301
Target Start/End: Original strand, 6073635 - 6073948
Alignment:
| Q |
7 |
cttgttgtatccaaaa-tcagttgtggcatgttgttgcagaaattatccttcacattgcacaaataagagttgttaatttaaataaactaatgaatgaag |
105 |
Q |
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|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
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| T |
6073635 |
cttgttgtatccaaaaatcagttgtggcatgttgttgcagaaattatccttcacattgcacaaataagagttgttaatttaaataaactaatggatgaag |
6073734 |
T |
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| Q |
106 |
taataaatattattatgtattatgaagtgttaaagtatccaacatgaaccttaata------------------gaggtatcaaatgaagctatattggt |
187 |
Q |
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| T |
6073735 |
taataaatattattatgtattatgaagtgttaaagtatccaacatgaaccttaatagaggtttgaaaacttgatgaggtatcaaatgaagctatattggt |
6073834 |
T |
|
| Q |
188 |
cgccgagggtaagataacagattgatttgagatgctgcattgttctggaaaactaaaagcttgccgtgcgaaatattcattgttagtaggcggggtaatt |
287 |
Q |
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| T |
6073835 |
cgccgagggtaagataacagattgatttgagatgctgcattgttctggaaaactaaaagcttgccgtgcgaaatattcattgttagtaggcggggtaatt |
6073934 |
T |
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| Q |
288 |
gcattgttagaatt |
301 |
Q |
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| T |
6073935 |
gcattgttagaatt |
6073948 |
T |
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