View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1772_low_12 (Length: 296)
Name: NF1772_low_12
Description: NF1772
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1772_low_12 |
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Alignment Details
Target: chr8 (Bit Score: 243; Significance: 1e-135; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 243; E-Value: 1e-135
Query Start/End: Original strand, 10 - 279
Target Start/End: Complemental strand, 5903324 - 5903057
Alignment:
| Q |
10 |
aagaatataaactaaggtagattattgagtcaatagtcaatatttataactatattatatattttagaaaatgaacaacatattaagaaaattattgcaa |
109 |
Q |
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| T |
5903324 |
aagaaaataaactaaggtagattattgagtcaatagtcaatatttataactatattatat--tttagaaaatgaacaaaatattaagaaaattattgcaa |
5903227 |
T |
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| Q |
110 |
acaacttacttggattccagaccatcctttcttgatatcatcagcaacacttgaagactcattgacccatccaagcaaaatccttctattcttcccatca |
209 |
Q |
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| T |
5903226 |
ccaacttacatggattccagaccatcctttcttgatatcatcagcaacacttgaagactcattgacccatccaagcaaaatccttctattcttcccatca |
5903127 |
T |
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| Q |
210 |
tcaaagaaagtttttgatgcataatattttccataatcatatctcaaaatttgttcaatattttcctcct |
279 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5903126 |
tcaaagaaagtttttgatgcataatattttccataatcatatctcaaaatttgttcaatattttcctcct |
5903057 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 93; Significance: 3e-45; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 93; E-Value: 3e-45
Query Start/End: Original strand, 112 - 256
Target Start/End: Original strand, 42875113 - 42875257
Alignment:
| Q |
112 |
aacttacttggattccagaccatcctttcttgatatcatcagcaacacttgaagactcattgacccatccaagcaaaatccttctattcttcccatcatc |
211 |
Q |
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| T |
42875113 |
aacttacatggattccagaccatcctttcttgacatcatcaacaacacttgaagattcattagcccaacccaacaagatccttctattcttcccatcatc |
42875212 |
T |
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| Q |
212 |
aaagaaagtttttgatgcataatattttccataatcatatctcaa |
256 |
Q |
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| T |
42875213 |
aaaaaatgtttttgatgcataatatttcccataatcatatctcaa |
42875257 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 146 - 252
Target Start/End: Complemental strand, 1055428 - 1055322
Alignment:
| Q |
146 |
atcatcagcaacacttgaagactcattgacccatccaagcaaaatccttctattcttcccatcatcaaagaaagtttttgatgcataatattttccataa |
245 |
Q |
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||||| ||||||| |||| | |||||| |||| |||||||||||||||||||| || ||||| | ||||||| ||||||||||||||||||| | ||| |
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| T |
1055428 |
atcattagcaacatttgagtagtcattggcccaaccaagcaaaatccttctattttttccatccttaaagaaatattttgatgcataatattttgcttaa |
1055329 |
T |
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| Q |
246 |
tcatatc |
252 |
Q |
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|| |||| |
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| T |
1055328 |
tcttatc |
1055322 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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