View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1772_low_14 (Length: 281)

Name: NF1772_low_14
Description: NF1772
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1772_low_14
NF1772_low_14
[»] chr4 (5 HSPs)
chr4 (35-127)||(46024953-46025052)
chr4 (35-86)||(46306566-46306617)
chr4 (174-213)||(46306624-46306663)
chr4 (54-127)||(46263158-46263238)
chr4 (124-173)||(46302775-46302822)


Alignment Details
Target: chr4 (Bit Score: 58; Significance: 2e-24; HSPs: 5)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 35 - 127
Target Start/End: Complemental strand, 46025052 - 46024953
Alignment:
Q  35 acgtccttggccttttgtaaacatatattttaattctgcatctctttc-------tttgtcttttaggaaccaacatccatttgataatcacgacaagaa 127  Q
    |||||||||||||||||||||||| ||||||||||||||||||| |||       |||||||||||||||||||||| |||||||||||||| |||||||    
T  46025052 acgtccttggccttttgtaaacatttattttaattctgcatctcattccctcttttttgtcttttaggaaccaacattcatttgataatcaccacaagaa 46024953  T

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Target: chr4; HSP #2
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 35 - 86
Target Start/End: Original strand, 46306566 - 46306617
Alignment:
Q  35 acgtccttggccttttgtaaacatatattttaattctgcatctctttctttg 86  Q
    |||||||||||||||||||||||| |||||||||||||||||||||||||||    
T  46306566 acgtccttggccttttgtaaacatttattttaattctgcatctctttctttg 46306617  T

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Target: chr4; HSP #3
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 174 - 213
Target Start/End: Original strand, 46306624 - 46306663
Alignment:
Q  174 tatacactctggccaaaaacatataagttacgcataacat 213  Q
    ||||||||||||||||||||||||||||||||||||||||    
T  46306624 tatacactctggccaaaaacatataagttacgcataacat 46306663  T

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Target: chr4; HSP #4
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 54 - 127
Target Start/End: Original strand, 46263158 - 46263238
Alignment:
Q  54 aacatatattttaattctgcatctctttc-------tttgtcttttaggaaccaacatccatttgataatcacgacaagaa 127  Q
    ||||| ||||||||||||||||||| |||       |||||||||||||||||||||| |||||||||||||| |||||||    
T  46263158 aacatttattttaattctgcatctcattccctcttttttgtcttttaggaaccaacattcatttgataatcaccacaagaa 46263238  T

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Target: chr4; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 124 - 173
Target Start/End: Original strand, 46302775 - 46302822
Alignment:
Q  124 agaagattattattagtaaacaacatgcagaaagaagttgagtctttata 173  Q
    ||||||||||||  | ||| ||||||||||||||||||||||||||||||    
T  46302775 agaagattatta--aataaccaacatgcagaaagaagttgagtctttata 46302822  T

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