View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1772_low_15 (Length: 262)
Name: NF1772_low_15
Description: NF1772
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1772_low_15 |
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Alignment Details
Target: chr2 (Bit Score: 239; Significance: 1e-132; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 239; E-Value: 1e-132
Query Start/End: Original strand, 1 - 243
Target Start/End: Complemental strand, 34674787 - 34674545
Alignment:
| Q |
1 |
tgaatggagcagtggaaacatgcaatggagaagacaagtttgtgatgtcgaaaaggttgaaaagttatttgaacttttctcaccctctaatatctgaaaa |
100 |
Q |
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| T |
34674787 |
tgaatggagcagtggaaacatgcaatggagaagacaagtttgtgatgtcgaaaaggttgaaaagttatttgaacttttctcaccctctaatatctgaaaa |
34674688 |
T |
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| Q |
101 |
tttcaatcccaacgaatgtgcttgggcctatggcatgaacatttttgatttggaagcttggaggaggaccaatataagcaatacatatcatcattgggtt |
200 |
Q |
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| T |
34674687 |
tttcaatcccaacgaatgtgcttgggcctatggcatgaacatttttgatttggaagcttggaggaggaccaatataagcaataaatatcatcattgggtt |
34674588 |
T |
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| Q |
201 |
gcgcaggtatgtttgtattacattctacagaaaagggaatatg |
243 |
Q |
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| T |
34674587 |
gcgcaggtatgtttgtattacattctacagaaaagggaatatg |
34674545 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 85; Significance: 1e-40; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 6 - 210
Target Start/End: Complemental strand, 55870118 - 55869914
Alignment:
| Q |
6 |
ggagcagtggaaacatgcaatggagaagacaagtttgtgatgtcgaaaaggttgaaaagttatttgaacttttctcaccctctaatatctgaaaatttca |
105 |
Q |
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| T |
55870118 |
ggagcagtagaaacatgcaaagggaaagataaacgtgtgatgtcaaagatgttgaaaagctatttgaacttctcccaccctctaatatctaaaaactttg |
55870019 |
T |
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| Q |
106 |
atcccaacgaatgtgcttgggcctatggcatgaacatttttgatttggaagcttggaggaggaccaatataagcaatacatatcatcattgggttgcgca |
205 |
Q |
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| T |
55870018 |
atccaaatgaatgtgcttgggcttatggcatgaacattcttgaccttgaagcttggaggaagaccaatataagctatacataccattattgggttgagca |
55869919 |
T |
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| Q |
206 |
ggtat |
210 |
Q |
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||||| |
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| T |
55869918 |
ggtat |
55869914 |
T |
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