View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1772_low_19 (Length: 220)
Name: NF1772_low_19
Description: NF1772
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1772_low_19 |
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| [»] chr2 (2 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 140; Significance: 2e-73; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 140; E-Value: 2e-73
Query Start/End: Original strand, 5 - 220
Target Start/End: Complemental strand, 6133996 - 6133780
Alignment:
| Q |
5 |
ttcttctcatagatac---acacgcggcaattacaagttcaatggcttggattaaaactgaaaactatttaatagtatactccatcttacaattgtcatg |
101 |
Q |
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| T |
6133996 |
ttcttctcatagatacgtgacacgcggcaattataagttcaatggcttggattaaaactgaaaactatttaatagtatactccatcttacaattgtcatg |
6133897 |
T |
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| Q |
102 |
ccctaattcttcaattcaattcaattcaat-ggaatcctcatcttcttcttccgcaacctcctcgccaaattcgaaacaagtaaccgattctggagaacg |
200 |
Q |
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| T |
6133896 |
ccctaa---ttcaattcaattcaatggaatccttatcatcttcttcttcttccgtaacctcctcgccgaattcaaaacaagtaaccgattctggagaacg |
6133800 |
T |
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| Q |
201 |
aaactgggtagatcttccac |
220 |
Q |
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| T |
6133799 |
aaactgggtagatcttccac |
6133780 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 21 - 66
Target Start/End: Original strand, 19014154 - 19014199
Alignment:
| Q |
21 |
acacgcggcaattacaagttcaatggcttggattaaaactgaaaac |
66 |
Q |
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| T |
19014154 |
acacgtggcaattacaagttcaatggcttggattaaaactgaaaac |
19014199 |
T |
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