View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF1772_low_2 (Length: 506)
Name: NF1772_low_2
Description: NF1772
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1772_low_2 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 283; Significance: 1e-158; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 283; E-Value: 1e-158
Query Start/End: Original strand, 201 - 491
Target Start/End: Original strand, 479313 - 479603
Alignment:
| Q |
201 |
ataaatacatgatgattgagcctaaatttatgaacgatttatttaaattttaattgcaaatttgtaacggcggctttatgtggaaatggagaaactcaga |
300 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
479313 |
ataaatacatgatgattgagcctaaatttatgaacgatttatttaaattttaattgcaaatttgtaacggcggctttatgtggaaatggagaaactcaga |
479412 |
T |
|
| Q |
301 |
gggtgcatgatcctgctgtgcatatcctactttatcaaccgtaaatattggtgcattgtttttgaagttgtgcgtgcgtacaagagggtggctaatatgg |
400 |
Q |
| |
|
|||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
479413 |
gggtgcctgatcgtgctgtgcatatcctactttatcaaccgtaaatattggtgcattgtttttgaagttgtgcgtgcgtacaagagggtggctaatatgg |
479512 |
T |
|
| Q |
401 |
atgaagggagaaacattattagaaaagaatgtattaatgttcaatgacaagcacctagtagtggttggtgctgtttgaacaccgataatgc |
491 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
479513 |
atgaagggagaaacattattagaaaagaatgtattaatgttcaatgacaagcacctagtagtggttggtgctgtttgaacaccgataatgc |
479603 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 79; E-Value: 1e-36
Query Start/End: Original strand, 21 - 103
Target Start/End: Original strand, 479126 - 479208
Alignment:
| Q |
21 |
aggcaacagttttgtgacgcaattttgttttaggcttgttgggttggaccaaatactggatgtaattatttttagacggaatc |
103 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
|
|
| T |
479126 |
aggcaacagttttgtgacgcaattttgttttaggcttgttgggttggacaaaatactggatgtaattatttttagacggaatc |
479208 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University