View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1772_low_3 (Length: 442)
Name: NF1772_low_3
Description: NF1772
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1772_low_3 |
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Alignment Details
Target: chr1 (Bit Score: 339; Significance: 0; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 339; E-Value: 0
Query Start/End: Original strand, 66 - 423
Target Start/End: Complemental strand, 31574037 - 31573682
Alignment:
| Q |
66 |
tgataaataatgtatgcatgcaatgaaaaggctgagagagtcaggcatgattcttctactgctatgccgccctatctatctctctagctatgactctatc |
165 |
Q |
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| T |
31574037 |
tgataaataatgtatgcatgcaatgaaaaggctgagagagtcaggcatgattcttctactgctatgccgccctatctatctctctagctatgactctatc |
31573938 |
T |
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| Q |
166 |
tatcatttctgacccccagtaataggaaatagctacctagctagctacccaaccaaccaagacaactcatcaacattgtttgttcctttcaatgctttct |
265 |
Q |
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| T |
31573937 |
tatcatttctgacccccagtaataggaaatagctacctagctagctacccaaccaaccaagacaactcatcaacattgtttgttcctttcaatgctttct |
31573838 |
T |
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| Q |
266 |
tagctgtgcctgtgagctgtatcctttaaattttcccttcttcattgcactgtgtaatgtgtatgtatgtatgatgctttaaatcactgttgactgtaat |
365 |
Q |
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| T |
31573837 |
tagctgtgcctgtgagctgtgtcctttaaattttcccttcttcattgtactgtgtaatgtgtatgta--tatgatgctttaaatcactgttgactgtaat |
31573740 |
T |
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| Q |
366 |
tagtgattagttatgttgctacgttcacctccacctttaatcccaccaaccccttttt |
423 |
Q |
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| T |
31573739 |
tagtgattagttatgttgctacgttcacctccacctttaatcccaccaaccccttttt |
31573682 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 10 - 40
Target Start/End: Complemental strand, 31574088 - 31574058
Alignment:
| Q |
10 |
acatcatcatattatatttttatagttgaat |
40 |
Q |
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| T |
31574088 |
acatcatcatattatatttttatagttgaat |
31574058 |
T |
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