View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1772_low_6 (Length: 390)
Name: NF1772_low_6
Description: NF1772
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1772_low_6 |
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Alignment Details
Target: chr1 (Bit Score: 325; Significance: 0; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 325; E-Value: 0
Query Start/End: Original strand, 1 - 370
Target Start/End: Complemental strand, 52082101 - 52081736
Alignment:
| Q |
1 |
tcatgacatatatctttgaccattaagtatcttgtttgtggagatagcattcatgtgataaaaatagttgcaagctgtgtgtatcattgtttatgcttta |
100 |
Q |
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| T |
52082101 |
tcatgacatatatctttgaccattaagtatcttgtttgtggagatagcattcatgtgataaaaatagttccaagctgtgtgtatcattgtttatgcttg- |
52082003 |
T |
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| Q |
101 |
atttgtttgtgttccaaaggatggaagtgtaaaaggtacattttgtcggtttcttttgcattttctttgagctcaaccttttgtaatcatcaacctcaat |
200 |
Q |
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| T |
52082002 |
---tttatgtgttccaaaggatggaagtgtaaaaggtacattttgtcggtttcttttgcattttctttgagctcaaccttttgtaatcatcaacctcaat |
52081906 |
T |
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| Q |
201 |
atagtttccattttgtctgaatgaattttttgcaacaaaaattataagacatttgcataattaaaaaggcacagctttattgattcgtttaatgcaccaa |
300 |
Q |
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| T |
52081905 |
atagttcccattttgtctgaatgaattttttgcaacaaaaattataagacatttgcataattaaaaaggcacagctttattgattcgtttaatgcaccaa |
52081806 |
T |
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| Q |
301 |
aagctttaagaccggctcttttttaataccattgtttttccaaatcagttatacacggctcattcatctt |
370 |
Q |
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| T |
52081805 |
aagccttaagatcggctcttttttaataccattgtttttccaaatcagttatacacggctcattcatctt |
52081736 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 20 - 161
Target Start/End: Complemental strand, 52092304 - 52092155
Alignment:
| Q |
20 |
ccattaagtatcttgtttgtggagatagcattcatgtgataaaaatagttgcaag--ctgtgtgtatcattgtttatgctt---taatt--tgtt-tgtg |
111 |
Q |
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| T |
52092304 |
ccattaagtatcttgtttgtggagatagaattcatgtgataaaaatagttgcaggttgtgtgtgtatctttgtttatacttgtctatgtgctgttatgtg |
52092205 |
T |
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| Q |
112 |
ttccaaaggatggaagtgtaaaaggtacattttgtcggtttcttttgcat |
161 |
Q |
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| T |
52092204 |
ttccaaagcatggaagtgtaaaaggaaccttttgtcagcttcttttgcat |
52092155 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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