View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1772_low_7 (Length: 348)
Name: NF1772_low_7
Description: NF1772
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1772_low_7 |
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Alignment Details
Target: chr3 (Bit Score: 311; Significance: 1e-175; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 311; E-Value: 1e-175
Query Start/End: Original strand, 18 - 340
Target Start/End: Complemental strand, 41861111 - 41860789
Alignment:
| Q |
18 |
atattgggatgttgtgattttcattagtcttttaaactactacaatcacttaagacttgagcatggtcctaacatttctggttttcaatttttgcttgaa |
117 |
Q |
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| T |
41861111 |
atattgggatgttgtcattttcattagtcttttaaactactacaatcacttgagacttgagcatggtcctaacatttctggttttcaatttttgcttgaa |
41861012 |
T |
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| Q |
118 |
ccagataaccaattgcagttggattcccaactatgcttaattggtaaaaagaaacttcctggcagagggataactggctttcaggtattttgcttttgct |
217 |
Q |
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| T |
41861011 |
ccagataaccaattgcagttggattcccaactatgcttaattggtaaaaagaaacttcctggcagagggataactggctttcaggtattttgcttttgct |
41860912 |
T |
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| Q |
218 |
tcttgtgttaagtaacatttgtgattatcttttctctgacaattttttggtgattaactgcgaatttgttatttatttcagtttcttcctcaagattcca |
317 |
Q |
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| T |
41860911 |
tcttgtgttaagtaacatttgtgattatcttttctctgacaattttttggtgattaactgcgaatttgttatttatttcagtttcttcctcaagattcca |
41860812 |
T |
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| Q |
318 |
acaaagttatggttacctatgct |
340 |
Q |
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| T |
41860811 |
acaaagttatggttacctgtgct |
41860789 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 37; Significance: 0.000000000008; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 106 - 206
Target Start/End: Original strand, 531864 - 531964
Alignment:
| Q |
106 |
tttttgcttgaaccagataaccaattgcagttggattcccaactatgcttaattggtaaaaagaaacttcctggcagagggataactggctttcaggtat |
205 |
Q |
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| T |
531864 |
tttttggttgaatcagataatcaattacggatgcaatcacaactatgcttacttggtaaaaagaaatcttctggaagaggaataaccggctttcaggtat |
531963 |
T |
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| Q |
206 |
t |
206 |
Q |
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| T |
531964 |
t |
531964 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 293 - 335
Target Start/End: Original strand, 532066 - 532108
Alignment:
| Q |
293 |
tttcagtttcttcctcaagattccaacaaagttatggttacct |
335 |
Q |
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| T |
532066 |
tttcagtttcttccacaagattttaacaaagttatggttacct |
532108 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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