View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1772_low_9 (Length: 320)

Name: NF1772_low_9
Description: NF1772
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1772_low_9
NF1772_low_9
[»] chr1 (6 HSPs)
chr1 (62-175)||(51285245-51285358)
chr1 (68-174)||(48494885-48494991)
chr1 (70-177)||(47508233-47508340)
chr1 (73-148)||(47189293-47189368)
chr1 (115-175)||(5733160-5733220)
chr1 (102-173)||(12307925-12307996)
[»] chr7 (3 HSPs)
chr7 (9-136)||(32635359-32635495)
chr7 (126-174)||(11033487-11033535)
chr7 (70-175)||(37125552-37125657)
[»] chr8 (3 HSPs)
chr8 (175-305)||(10679657-10679786)
chr8 (70-174)||(39312534-39312638)
chr8 (126-164)||(13476361-13476399)
[»] scaffold1342 (1 HSPs)
scaffold1342 (97-174)||(1227-1304)
[»] chr2 (4 HSPs)
chr2 (97-174)||(4009254-4009331)
chr2 (86-174)||(36620177-36620265)
chr2 (111-174)||(29522585-29522648)
chr2 (97-174)||(43326101-43326178)
[»] chr6 (2 HSPs)
chr6 (70-174)||(92308-92412)
chr6 (74-175)||(11139334-11139434)
[»] chr5 (3 HSPs)
chr5 (73-171)||(13627363-13627461)
chr5 (104-175)||(3805677-3805748)
chr5 (126-174)||(22775942-22775990)
[»] scaffold0026 (1 HSPs)
scaffold0026 (98-174)||(91558-91634)
[»] chr4 (2 HSPs)
chr4 (70-174)||(55403334-55403438)
chr4 (126-155)||(54486281-54486310)


Alignment Details
Target: chr1 (Bit Score: 78; Significance: 3e-36; HSPs: 6)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 78; E-Value: 3e-36
Query Start/End: Original strand, 62 - 175
Target Start/End: Complemental strand, 51285358 - 51285245
Alignment:
Q  62 agtgagggtggcatggttgtgaatttcatattaactcaagggtattttggtattttcacataaataatgggatggccatggccatcccctgtccccacgt 161  Q
    ||||||||||||||||||||  |||| ||||||||| ||||||||||||||| |||| || |||||||||| ||||||||||| ||||||||||||||||    
T  51285358 agtgagggtggcatggttgtagattttatattaacttaagggtattttggtaatttctcaaaaataatggggtggccatggccttcccctgtccccacgt 51285259  T
Q  162 ggctccgccactgg 175  Q
    ||||||||||||||    
T  51285258 ggctccgccactgg 51285245  T

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Target: chr1; HSP #2
Raw Score: 71; E-Value: 4e-32
Query Start/End: Original strand, 68 - 174
Target Start/End: Original strand, 48494885 - 48494991
Alignment:
Q  68 ggtggcatggttgtgaatttcatattaactcaagggtattttggtattttcacataaataatgggatggccatggccatcccctgtccccacgtggctcc 167  Q
    |||||||||||||| ||||||||||||||||||||||||||||||| |||  || ||||||||||| |  |||||||||||||||||||||||||| |||    
T  48494885 ggtggcatggttgtaaatttcatattaactcaagggtattttggtaattttccacaaataatgggacgatcatggccatcccctgtccccacgtggttcc 48494984  T
Q  168 gccactg 174  Q
    |||||||    
T  48494985 gccactg 48494991  T

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Target: chr1; HSP #3
Raw Score: 57; E-Value: 9e-24
Query Start/End: Original strand, 70 - 177
Target Start/End: Complemental strand, 47508340 - 47508233
Alignment:
Q  70 tggcatggttgtgaatttcatattaactcaagggtattttggtattttcacataaata-atgggatggccatggccatcccctgtccccacgtggctccg 168  Q
    |||||||||||| || ||||| ||||| |||||||||||||||| |||| || ||||  ||||| |||||||||||||||||||||| ||||||||||||    
T  47508340 tggcatggttgtaaaattcattttaacccaagggtattttggtaatttc-cacaaattgatggggtggccatggccatcccctgtcctcacgtggctccg 47508242  T
Q  169 ccactgggt 177  Q
    |||||||||    
T  47508241 ccactgggt 47508233  T

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Target: chr1; HSP #4
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 73 - 148
Target Start/End: Complemental strand, 47189368 - 47189293
Alignment:
Q  73 catggttgtgaatttcatattaactcaagggtattttggtattttcacataaataatgggatggccatggccatcc 148  Q
    |||||||||  |||||||||||||||||||||||||||||| |||| || ||||||||||  ||||||||||||||    
T  47189368 catggttgtatatttcatattaactcaagggtattttggtaatttcccaaaaataatgggtaggccatggccatcc 47189293  T

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Target: chr1; HSP #5
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 115 - 175
Target Start/End: Complemental strand, 5733220 - 5733160
Alignment:
Q  115 tttcacataaataatgggatggccatggccatcccctgtccccacgtggctccgccactgg 175  Q
    |||| |||||||||||||  ||| |||||||||||| ||||||| ||||||||||||||||    
T  5733220 tttctcataaataatgggtaggctatggccatccccagtccccaagtggctccgccactgg 5733160  T

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Target: chr1; HSP #6
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 102 - 173
Target Start/End: Original strand, 12307925 - 12307996
Alignment:
Q  102 ggtattttggtattttcacataaataatgggatggccatggccatcccctgtccccacgtggctccgccact 173  Q
    |||||| | ||| ||||||| || |||||||  |||||||||||| ||||||||||| | ||||||||||||    
T  12307925 ggtattatagtaatttcacagaactaatgggtaggccatggccataccctgtccccatgcggctccgccact 12307996  T

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Target: chr7 (Bit Score: 73; Significance: 2e-33; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 9 - 136
Target Start/End: Complemental strand, 32635495 - 32635359
Alignment:
Q  9 gagaagaagagtgaactcacgtggtcgtcgccagagtagagagaagagcgcat---------agtgagggtggcatggttgtgaatttcatattaactca 99  Q
    |||||||||||||||||  |||||||||||||||||| |||||| |||||| |         |||||||||||||||||||| |||||||||||||||||    
T  32635495 gagaagaagagtgaacttgcgtggtcgtcgccagagtggagagatgagcgcgtttcaggaaaagtgagggtggcatggttgtaaatttcatattaactca 32635396  T
Q  100 agggtattttggtattttcacataaataatgggatgg 136  Q
    |||||||||||||| |||| |||||||||||||||||    
T  32635395 agggtattttggtaatttctcataaataatgggatgg 32635359  T

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Target: chr7; HSP #2
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 126 - 174
Target Start/End: Complemental strand, 11033535 - 11033487
Alignment:
Q  126 taatgggatggccatggccatcccctgtccccacgtggctccgccactg 174  Q
    ||||||||||||||||||||| |||||||| ||||||||||||||||||    
T  11033535 taatgggatggccatggccattccctgtccacacgtggctccgccactg 11033487  T

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Target: chr7; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 70 - 175
Target Start/End: Complemental strand, 37125657 - 37125552
Alignment:
Q  70 tggcatggttgtgaatttcatattaactcaagggtattttggtattttcacataaataatgggatggccatggccatcccctgtccccacgtggctccgc 169  Q
    |||||||||||| || || | ||||  ||||||||||| | ||| ||||| | || |||||||  |||||||||||| | ||||||||| ||||||||||    
T  37125657 tggcatggttgtaaaattaaaattatatcaagggtattatagtaatttcaaagaattaatgggtaggccatggccatactctgtccccatgtggctccgc 37125558  T
Q  170 cactgg 175  Q
    ||||||    
T  37125557 cactgg 37125552  T

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Target: chr8 (Bit Score: 66; Significance: 4e-29; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 175 - 305
Target Start/End: Complemental strand, 10679786 - 10679657
Alignment:
Q  175 ggtacaataataaaagttgtcttgtgacccggtcaatcgttaagtactgtnnnnnnnnnnnnnct-gtccagatttatcctacttcctatgtctatatct 273  Q
    |||||||||||||||||||||| |||||||||||||||||||||||||||             |  ||||||||||||||||||||||||||||||  ||    
T  10679786 ggtacaataataaaagttgtctggtgacccggtcaatcgttaagtactgttatatatatctgtccagtccagatttatcctacttcctatgtctat--ct 10679689  T
Q  274 caatttcgttttcttaatcatacagtttatct 305  Q
    ||||||||||||||||||||||||||||||||    
T  10679688 caatttcgttttcttaatcatacagtttatct 10679657  T

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Target: chr8; HSP #2
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 70 - 174
Target Start/End: Complemental strand, 39312638 - 39312534
Alignment:
Q  70 tggcatggttgtgaatttcatattaactcaagggtattttggtattttcacataaat-aatgggatggccatggccatcccctgtccccacgtggctccg 168  Q
    |||||||||||| || ||||| ||||| |||||||||||||||| |||| || |||| |||||| |||||||||||||||| ||||| ||||||||||||    
T  39312638 tggcatggttgtaaaattcattttaacccaagggtattttggtaatttc-cacaaattaatggggtggccatggccatcccatgtcctcacgtggctccg 39312540  T
Q  169 ccactg 174  Q
    ||||||    
T  39312539 ccactg 39312534  T

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Target: chr8; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 126 - 164
Target Start/End: Original strand, 13476361 - 13476399
Alignment:
Q  126 taatgggatggccatggccatcccctgtccccacgtggc 164  Q
    ||||||||||||||||| |||||||||||| ||||||||    
T  13476361 taatgggatggccatggtcatcccctgtccacacgtggc 13476399  T

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Target: scaffold1342 (Bit Score: 46; Significance: 3e-17; HSPs: 1)
Name: scaffold1342
Description:

Target: scaffold1342; HSP #1
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 97 - 174
Target Start/End: Complemental strand, 1304 - 1227
Alignment:
Q  97 tcaagggtattttggtattttcacataaataatgggatggccatggccatcccctgtccccacgtggctccgccactg 174  Q
    ||||||||||  | ||| ||||||| ||||||||||  |||||||||||||||||||||||| |||||||||||||||    
T  1304 tcaagggtataatagtaatttcacaaaaataatgggcaggccatggccatcccctgtccccaagtggctccgccactg 1227  T

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Target: chr2 (Bit Score: 46; Significance: 3e-17; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 97 - 174
Target Start/End: Complemental strand, 4009331 - 4009254
Alignment:
Q  97 tcaagggtattttggtattttcacataaataatgggatggccatggccatcccctgtccccacgtggctccgccactg 174  Q
    ||||||||||  | ||| ||||||| ||||||||||  |||||||||||||||||||||||| |||||||||||||||    
T  4009331 tcaagggtataatagtaatttcacaaaaataatgggcaggccatggccatcccctgtccccaagtggctccgccactg 4009254  T

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Target: chr2; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 86 - 174
Target Start/End: Original strand, 36620177 - 36620265
Alignment:
Q  86 ttcatattaactcaagggtattttggtattttcacataaataatgggatggccatggccatcccctgtccccacgtggctccgccactg 174  Q
    |||| |||| || ||||||||| ||||| ||||||| || |||||||  || ||| ||||| ||| |||| ||||||||||||||||||    
T  36620177 ttcaaattagcttaagggtattatggtaatttcacaaaattaatgggcaggacatcgccatacccagtcctcacgtggctccgccactg 36620265  T

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Target: chr2; HSP #3
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 111 - 174
Target Start/End: Original strand, 29522585 - 29522648
Alignment:
Q  111 gtattttcacataaataatgggatggccatggccatcccctgtccccacgtggctccgccactg 174  Q
    ||||||||||| ||  ||||||  |||||||||||| ||| |||| ||||||||||||||||||    
T  29522585 gtattttcacaaaataaatgggtaggccatggccatacccagtccacacgtggctccgccactg 29522648  T

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Target: chr2; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 97 - 174
Target Start/End: Complemental strand, 43326178 - 43326101
Alignment:
Q  97 tcaagggtattttggtattttcacataaataatgggatggccatggccatcccctgtccccacgtggctccgccactg 174  Q
    ||||||||||| | ||| ||||||| || |||||||  ||||||| | || |||||||| || |||||||||||||||    
T  43326178 tcaagggtattatagtaatttcacagaattaatgggtaggccatgactataccctgtcctcatgtggctccgccactg 43326101  T

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Target: chr6 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 70 - 174
Target Start/End: Complemental strand, 92412 - 92308
Alignment:
Q  70 tggcatggttgtgaatttcatattaactcaagggtattttggtattttcacataaataatgggatggccatggccatcccctgtccccacgtggctccgc 169  Q
    |||||||||||| || || | ||||  |||| |||||| | ||| ||||||| || |||||||  |||||||||||| ||||||||||| ||||||||||    
T  92412 tggcatggttgtaaaattaagattatatcaaaggtattatagtaatttcacagaattaatgggtaggccatggccataccctgtccccatgtggctccgc 92313  T
Q  170 cactg 174  Q
    |||||    
T  92312 cactg 92308  T

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Target: chr6; HSP #2
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 74 - 175
Target Start/End: Complemental strand, 11139434 - 11139334
Alignment:
Q  74 atggttgtgaatttcatattaactcaagggtattttggtattttcacataaataatgggatggccatggccatcccctgtccccacgtggctccgccact 173  Q
    |||||||| |||||||| |||||  |||||||||||| || ||||    ||||||||||  |||||||||||||||| |||| || |||| |||||||||    
T  11139434 atggttgtaaatttcattttaacctaagggtattttgataatttctataaaataatggggaggccatggccatccccagtcctcaagtgg-tccgccact 11139336  T
Q  174 gg 175  Q
    ||    
T  11139335 gg 11139334  T

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Target: chr5 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 73 - 171
Target Start/End: Original strand, 13627363 - 13627461
Alignment:
Q  73 catggttgtgaatttcatattaactcaagggtattttggta-ttttcacataaataatgggatggccatggccatcccctgtccccacgtggctccgcca 171  Q
    ||||||||| || ||||| ||||  |||| ||||||||||| |||| ||| || ||||||| |||||||||||||||||||||| |||||||||| ||||    
T  13627363 catggttgtaaaattcattttaatccaagagtattttggtaatttttaca-aattaatggggtggccatggccatcccctgtcctcacgtggctctgcca 13627461  T

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Target: chr5; HSP #2
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 104 - 175
Target Start/End: Original strand, 3805677 - 3805748
Alignment:
Q  104 tattttggtattttcacataaataatgggatggccatggccatcccctgtccccacgtggctccgccactgg 175  Q
    |||| |||||||||| || || |||||||  |||||||||||| ||| |||| |||||||||| ||||||||    
T  3805677 tattatggtattttcccagaattaatgggtaggccatggccatacccagtcctcacgtggctctgccactgg 3805748  T

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Target: chr5; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 126 - 174
Target Start/End: Complemental strand, 22775990 - 22775942
Alignment:
Q  126 taatgggatggccatggccatcccctgtccccacgtggctccgccactg 174  Q
    |||||||  ||| ||||||| |||||||||||| |||||||||||||||    
T  22775990 taatgggtaggctatggccagcccctgtccccaagtggctccgccactg 22775942  T

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Target: scaffold0026 (Bit Score: 37; Significance: 0.000000000007; HSPs: 1)
Name: scaffold0026
Description:

Target: scaffold0026; HSP #1
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 98 - 174
Target Start/End: Complemental strand, 91634 - 91558
Alignment:
Q  98 caagggtattttggtattttcacataaataatgggatggccatggccatcccctgtccccacgtggctccgccactg 174  Q
    |||||||||| || || ||||||| ||||| ||||  |||||||||||| |||||||| ||||||||||| ||||||    
T  91634 caagggtattatgataatttcacagaaatactgggtaggccatggccataccctgtcctcacgtggctccaccactg 91558  T

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Target: chr4 (Bit Score: 37; Significance: 0.000000000007; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 70 - 174
Target Start/End: Complemental strand, 55403438 - 55403334
Alignment:
Q  70 tggcatggttgtgaatttcatattaactcaagggtattttggtattttcacataaataatgggatggccatggccatcccctgtccccacgtggctccgc 169  Q
    |||||||||||| || || | ||||  ||||||||||| | ||| ||||||| || |||||||  ||||||| |||| | ||||||||| ||||||||||    
T  55403438 tggcatggttgtaaaattaaaattatatcaagggtattatagtaatttcacagaattaatgggtaggccatgaccatactctgtccccatgtggctccgc 55403339  T
Q  170 cactg 174  Q
    |||||    
T  55403338 cactg 55403334  T

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Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 126 - 155
Target Start/End: Complemental strand, 54486310 - 54486281
Alignment:
Q  126 taatgggatggccatggccatcccctgtcc 155  Q
    ||||||||||||||||||||||||||||||    
T  54486310 taatgggatggccatggccatcccctgtcc 54486281  T

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