View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17730_high_1 (Length: 542)
Name: NF17730_high_1
Description: NF17730
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17730_high_1 |
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Alignment Details
Target: chr1 (Bit Score: 333; Significance: 0; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 333; E-Value: 0
Query Start/End: Original strand, 202 - 534
Target Start/End: Original strand, 7258005 - 7258337
Alignment:
| Q |
202 |
aatgaaatcaacttactactccaagttgttctgatgctttggccttccaaagtctgaggttagtatcatcacttcctgaaataacataacttccatcgcc |
301 |
Q |
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| T |
7258005 |
aatgaaatcaacttactactccaagttgttctgatgctttggccttccaaagtctgaggttagtatcatcacttcctgaaataacataacttccatcgcc |
7258104 |
T |
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| Q |
302 |
actgaacttgacacagaataccctgtgaacaaaagaagaagattagctgccatagagcaagataagaatatttccataaactcgacacaaacagcaaaag |
401 |
Q |
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| T |
7258105 |
actgaacttgacacagaataccctgtgaacaaaagaagaagattagctgccatagagcaagataagaatatttccataaactcgacacaaacagcaaaag |
7258204 |
T |
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| Q |
402 |
aaatcttttaaacagctgaggtatgtatcgttcgaaaagttaagcggacaattaaacacaacagaatgttcagtgcacaatatgtatattgagtgaacct |
501 |
Q |
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| T |
7258205 |
aaatcttttaaacagctgaggtatgtatcgttcgaaaagttaagcggacaattaaacacaacagaatgttcagtgcacaatatgtatattgagtgaacct |
7258304 |
T |
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| Q |
502 |
ttgcattcttttagtatgataaatctctctgct |
534 |
Q |
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| T |
7258305 |
ttgcattcttttagtatgataaatctctctgct |
7258337 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 93 - 152
Target Start/End: Original strand, 7257902 - 7257961
Alignment:
| Q |
93 |
tcacagttataatagaatttcaatcttagtacaacatgaaccacaattaatagatgacag |
152 |
Q |
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| T |
7257902 |
tcacagttataatagaatttcaatcttagtacaacatgaaccacaattaatagatgacag |
7257961 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 59; E-Value: 9e-25
Query Start/End: Original strand, 25 - 87
Target Start/End: Original strand, 7257800 - 7257862
Alignment:
| Q |
25 |
catcatcataaacaggtgaatctcggaatgaattgaagggcctctcagaagagaaattattaa |
87 |
Q |
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| T |
7257800 |
catcatcataaacaggtgaatctcggaatgaactgaagggcctctcagaagagaaattattaa |
7257862 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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