View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17730_high_2 (Length: 481)
Name: NF17730_high_2
Description: NF17730
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17730_high_2 |
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Alignment Details
Target: chr7 (Bit Score: 311; Significance: 1e-175; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 311; E-Value: 1e-175
Query Start/End: Original strand, 149 - 478
Target Start/End: Complemental strand, 48695176 - 48694844
Alignment:
| Q |
149 |
atgttgatgattcta---cttctactactactactgaggagggaggaggagttgcagcaagtgttgtcctgcaaagagggcaggttgagtgggaatggaa |
245 |
Q |
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| T |
48695176 |
atgttgatgattctatgtctactactactactactgaggagggaggaggagttgcagcaagtgttgtcctgcaaagagggcaggttgagtgggaatggaa |
48695077 |
T |
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| Q |
246 |
ccacatatcaatgcaatctatgtgaaacatgtgattgcatttaggcaaaaccctcaccttttctccttcaaccacttccgacaggcaaactgaacactcc |
345 |
Q |
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| T |
48695076 |
ccacatatcaatgcaatctatgtgaaacatgtgattgcatttaggcaaaaccctcaccttttctccttcaaccacttccgacaggcaaactgaacactcc |
48694977 |
T |
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| Q |
346 |
aaatcaaaaccatcttcttttgaattgaatattgatatgggtagggagttgagtacggaaggatcaagaccaccaccctcttgaccactacgccggcgcc |
445 |
Q |
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| T |
48694976 |
aaatcaaaaccatcttcttttgaattgaatattgatatgggtagggagttgagtacggaaggatcaagaccaccaccctcttgaccactacgccggcgcc |
48694877 |
T |
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| Q |
446 |
ttcgggattgggaattgttgtctctgctcctcc |
478 |
Q |
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| T |
48694876 |
ttcgggattgggaattgttgtcactgctcctcc |
48694844 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 120; E-Value: 3e-61
Query Start/End: Original strand, 1 - 131
Target Start/End: Complemental strand, 48695333 - 48695200
Alignment:
| Q |
1 |
tcagctctgctgttgttatttatagtattatcaccatcggatgatgatgaagaagtgttttgttccgaagtagtagatgaag---aagaggttatttggt |
97 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
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| T |
48695333 |
tcagctctgctgttgttatttatagtattatcaccatcggatgatgatgaagaagtgttttgttccgaagtagtagatgaagaagaagaggttatttggt |
48695234 |
T |
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| Q |
98 |
tgtggttgccccaaatcaagacatttgtgggaaa |
131 |
Q |
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| T |
48695233 |
tgtggttgccccaaatcaagacatttgtgggaaa |
48695200 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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