View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17730_high_5 (Length: 363)

Name: NF17730_high_5
Description: NF17730
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17730_high_5
NF17730_high_5
[»] chr4 (4 HSPs)
chr4 (147-357)||(33550244-33550454)
chr4 (147-357)||(26230618-26230829)
chr4 (1-67)||(26230909-26230975)
chr4 (1-67)||(33550533-33550599)
[»] chr7 (2 HSPs)
chr7 (147-357)||(8335378-8335588)
chr7 (4-67)||(8335235-8335298)
[»] chr2 (2 HSPs)
chr2 (147-286)||(4684810-4684949)
chr2 (1-67)||(4684664-4684730)
[»] chr8 (1 HSPs)
chr8 (273-357)||(26632561-26632645)


Alignment Details
Target: chr4 (Bit Score: 207; Significance: 1e-113; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 207; E-Value: 1e-113
Query Start/End: Original strand, 147 - 357
Target Start/End: Complemental strand, 33550454 - 33550244
Alignment:
Q  147 tgataacgtaccttgattggagtgtttaaatcattatcagaaatgtgtatatcaaatataatgacttcctctggatacatgctacgactatgaaaagaag 246  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  33550454 tgataacgtaccttgattggagtgtttaaatcattatcagaaatgtgtatatcaaatataatgacttcctctggatacatgctacgactatgaaaagaag 33550355  T
Q  247 gtattttagtagcgcaaaatacttccctgaacattataactttaaaaagattatttccgtagtatccaaaaataatgtcaacattgtctggaaaatgatg 346  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||    
T  33550354 gtattttagtagcgcaaaatacttccctgaacattataactttaaaaagattatttccgtagtatccaaaaataatgtcaacattgtttggaaaatgatg 33550255  T
Q  347 atattgttgga 357  Q
    |||||||||||    
T  33550254 atattgttgga 33550244  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 204; E-Value: 1e-111
Query Start/End: Original strand, 147 - 357
Target Start/End: Complemental strand, 26230829 - 26230618
Alignment:
Q  147 tgataacgtaccttgattggagtgtttaaatcattatcagaaatgtgtatatcaaatataatgacttcctctggatacatgctacgactatgaaaagaag 246  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  26230829 tgataacgtaccttgattggagtgtttaaatcattatcagaaatgtgtatatcaaatataatgacttcctctggatacatgctacgactatgaaaagaag 26230730  T
Q  247 gtattttagtagcgcaaaatacttccctgaacattataactttaaaaag-attatttccgtagtatccaaaaataatgtcaacattgtctggaaaatgat 345  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  26230729 gtattttagtagcgcaaaatacttccctgaacattataactttaaaaagaattatttccgtagtatccaaaaataatgtcaacattgtctggaaaatgat 26230630  T
Q  346 gatattgttgga 357  Q
    ||||||||||||    
T  26230629 gatattgttgga 26230618  T

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Target: chr4; HSP #3
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 1 - 67
Target Start/End: Complemental strand, 26230975 - 26230909
Alignment:
Q  1 caacacaaagttagaagactgcgaaagtcgttctgaagaaaggtcccaaaatgattgggcaacatct 67  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  26230975 caacacaaagttagaagactgcgaaagtcgttctgaagaaaggtcccaaaatgattgggcaacatct 26230909  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 1 - 67
Target Start/End: Complemental strand, 33550599 - 33550533
Alignment:
Q  1 caacacaaagttagaagactgcgaaagtcgttctgaagaaaggtcccaaaatgattgggcaacatct 67  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  33550599 caacacaaagttagaagactgcgaaagtcgttctgaagaaaggtcccaaaatgattgggcaacatct 33550533  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 195; Significance: 1e-106; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 195; E-Value: 1e-106
Query Start/End: Original strand, 147 - 357
Target Start/End: Original strand, 8335378 - 8335588
Alignment:
Q  147 tgataacgtaccttgattggagtgtttaaatcattatcagaaatgtgtatatcaaatataatgacttcctctggatacatgctacgactatgaaaagaag 246  Q
    |||||| ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  8335378 tgataatgtaccttgattggagtgttgaaatcattatcagaaatgtgtatatcaaatataatgacttcctctggatacatgctacgactatgaaaagaag 8335477  T
Q  247 gtattttagtagcgcaaaatacttccctgaacattataactttaaaaagattatttccgtagtatccaaaaataatgtcaacattgtctggaaaatgatg 346  Q
    ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||    
T  8335478 gtattttagtagcgcaaaaaacttccctgaacattataactttaaaaagattatttccatagtatccaaaaataatgtcaacattgtctggaaaatgatg 8335577  T
Q  347 atattgttgga 357  Q
    |||||||||||    
T  8335578 atattgttgga 8335588  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 4 - 67
Target Start/End: Original strand, 8335235 - 8335298
Alignment:
Q  4 cacaaagttagaagactgcgaaagtcgttctgaagaaaggtcccaaaatgattgggcaacatct 67  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||    
T  8335235 cacaaagttagaagactgcgaaagtcgttctgaagaaaggtcccaaaatgatcgggcaacatct 8335298  T

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Target: chr2 (Bit Score: 140; Significance: 3e-73; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 140; E-Value: 3e-73
Query Start/End: Original strand, 147 - 286
Target Start/End: Original strand, 4684810 - 4684949
Alignment:
Q  147 tgataacgtaccttgattggagtgtttaaatcattatcagaaatgtgtatatcaaatataatgacttcctctggatacatgctacgactatgaaaagaag 246  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4684810 tgataacgtaccttgattggagtgtttaaatcattatcagaaatgtgtatatcaaatataatgacttcctctggatacatgctacgactatgaaaagaag 4684909  T
Q  247 gtattttagtagcgcaaaatacttccctgaacattataac 286  Q
    ||||||||||||||||||||||||||||||||||||||||    
T  4684910 gtattttagtagcgcaaaatacttccctgaacattataac 4684949  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 1 - 67
Target Start/End: Original strand, 4684664 - 4684730
Alignment:
Q  1 caacacaaagttagaagactgcgaaagtcgttctgaagaaaggtcccaaaatgattgggcaacatct 67  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4684664 caacacaaagttagaagactgcgaaagtcgttctgaagaaaggtcccaaaatgattgggcaacatct 4684730  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 53; Significance: 2e-21; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 273 - 357
Target Start/End: Complemental strand, 26632645 - 26632561
Alignment:
Q  273 ctgaacattataactttaaaaagattatttccgtagtatccaaaaataatgtcaacattgtctggaaaatgatgatattgttgga 357  Q
    ||||||||||||||||||||||||||||||   || |||||||||| |||||||||||| || | ||||||||||||||||||||    
T  26632645 ctgaacattataactttaaaaagattatttttatattatccaaaaagaatgtcaacattatcggaaaaatgatgatattgttgga 26632561  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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