View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17731_high_5 (Length: 262)
Name: NF17731_high_5
Description: NF17731
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17731_high_5 |
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Alignment Details
Target: chr8 (Bit Score: 228; Significance: 1e-126; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 228; E-Value: 1e-126
Query Start/End: Original strand, 18 - 249
Target Start/End: Original strand, 41066923 - 41067154
Alignment:
| Q |
18 |
atgtccaccgatgtagttagttgggttgtatatataaataaaggtatattctttgttgtgaaataatactaatattgtaaaggtacggtaaaaccaatta |
117 |
Q |
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| T |
41066923 |
atgtccaccgatgtagttagttgggttatatatataaataaaggtatattctttgttgtgaaataatactaatattgtaaaggtacggtaaaaccaatta |
41067022 |
T |
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| Q |
118 |
cacataagtattctgcatctctctgatgtaaattgatggaataagtctgtttcttcattgggtaacaatactcccttgctttttgaaggttatataaccc |
217 |
Q |
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| T |
41067023 |
cacataagtattctgcatctctctgatgtaaattgatggaataagtctgtttcttcattgggtaacaatactcccttgctttttgaaggttatataaccc |
41067122 |
T |
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| Q |
218 |
cactcaccccaatagtaatagggtatacattc |
249 |
Q |
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| T |
41067123 |
cactcaccccaatagtaatagggtatacattc |
41067154 |
T |
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Target: chr3 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 19 - 114
Target Start/End: Complemental strand, 5391371 - 5391282
Alignment:
| Q |
19 |
tgtccaccgatgtagttagttgggttgtatatataaataaaggtatattctttgttgtgaaataatactaatattgtaaaggtacggtaaaaccaa |
114 |
Q |
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| T |
5391371 |
tgtccgccgatgtagttagttggctg---tatataataaaaggtatattctttgttgtgagata---ctaatattgtgaaggtactgtaaaaccaa |
5391282 |
T |
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