View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17731_low_2 (Length: 380)
Name: NF17731_low_2
Description: NF17731
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17731_low_2 |
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Alignment Details
Target: chr7 (Bit Score: 331; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 331; E-Value: 0
Query Start/End: Original strand, 9 - 371
Target Start/End: Original strand, 1374857 - 1375219
Alignment:
| Q |
9 |
gtttcatctactgcttattttcatagttgatcatttcccaagctgaaaatgctaaatgatcatatacaagattgtgactgcacaagtcccatctttttcc |
108 |
Q |
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| T |
1374857 |
gtttcatctactgcttattttcatagttgatcatttcccaagctgaaaatgctaaatgatcatatacaagattgtgactgcacaagtcccatctttttcg |
1374956 |
T |
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| Q |
109 |
ggacacttaatgatttcttttaccattttttaatcctataataaagtttgcatggtaaaggttaggggcacaaacagattaaacagtcttggtttgattt |
208 |
Q |
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| T |
1374957 |
ggacacttaatgatttcttttaccattttttaatcctataataaagtttgcatggtaaaggttaggggcacaaacagattaaacagtcttggtttgattt |
1375056 |
T |
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| Q |
209 |
tatataaaataannnnnnnnaaatacttgattatgaactgattataatgattttgctgtgaaataaaaatgcaggatgataataattttaatgattatga |
308 |
Q |
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| T |
1375057 |
tatataaaataattttttttaaatacttgattatgaactgattataataattttgctgtgaaataaaaatgcaggatgataataattttaatgattatga |
1375156 |
T |
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| Q |
309 |
agggaacattttctcaacttacattgacatccaaaataaaagagaggacctgttgagaataat |
371 |
Q |
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| T |
1375157 |
agggaacattttctcaacttacattgacatccaaaataaaagagaggacctgttgagaataat |
1375219 |
T |
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