View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17731_low_3 (Length: 327)

Name: NF17731_low_3
Description: NF17731
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17731_low_3
NF17731_low_3
[»] chr7 (1 HSPs)
chr7 (19-314)||(1375199-1375494)
[»] chr3 (6 HSPs)
chr3 (195-314)||(15242869-15242988)
chr3 (195-307)||(15203855-15203967)
chr3 (190-314)||(17782035-17782158)
chr3 (190-314)||(19090662-19090785)
chr3 (258-308)||(36639739-36639790)
chr3 (261-314)||(11578791-11578844)
[»] chr6 (8 HSPs)
chr6 (189-308)||(22607792-22607911)
chr6 (195-307)||(3754441-3754552)
chr6 (197-314)||(10345426-10345543)
chr6 (219-307)||(6109419-6109507)
chr6 (195-282)||(31344214-31344301)
chr6 (245-314)||(7099226-7099295)
chr6 (219-308)||(7412455-7412544)
chr6 (214-314)||(14480094-14480193)
[»] chr2 (5 HSPs)
chr2 (197-314)||(23150797-23150914)
chr2 (197-314)||(23562054-23562171)
chr2 (203-308)||(25880932-25881037)
chr2 (227-314)||(5356615-5356703)
chr2 (189-308)||(10886760-10886880)
[»] chr5 (5 HSPs)
chr5 (197-273)||(31393138-31393214)
chr5 (107-187)||(15135112-15135199)
chr5 (261-308)||(23167001-23167048)
chr5 (189-314)||(28421469-28421593)
chr5 (195-314)||(31022362-31022482)
[»] chr4 (2 HSPs)
chr4 (199-314)||(14331933-14332048)
chr4 (214-307)||(13033591-13033684)
[»] chr1 (1 HSPs)
chr1 (195-314)||(14746682-14746801)
[»] chr8 (5 HSPs)
chr8 (275-314)||(1565441-1565480)
chr8 (189-266)||(31178408-31178485)
chr8 (189-266)||(31178920-31178997)
chr8 (189-266)||(31179432-31179509)
chr8 (189-308)||(37296504-37296622)
[»] scaffold0233 (1 HSPs)
scaffold0233 (214-313)||(15993-16093)


Alignment Details
Target: chr7 (Bit Score: 280; Significance: 1e-157; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 280; E-Value: 1e-157
Query Start/End: Original strand, 19 - 314
Target Start/End: Original strand, 1375199 - 1375494
Alignment:
Q  19 agaggacctgttgagaataatatgtatatatccttagaagattataaatgtaaatttaaatatatttaaaataagatatcattaagatataactaatcat 118  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1375199 agaggacctgttgagaataatatgtatatatccttagaagattataaatgtaaatttaaatatatttaaaataagatatcattaagatataactaatcat 1375298  T
Q  119 tattggttgtattacattacatcctttaacagcagcgctagcattggatattgatccaagtacaatgtgagtgttggcagagccgttgtaagacccacgc 218  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||    
T  1375299 tattggttgtattacattacatcctttaacagcagcgctagcattggatattgatccaagtacaatgtgagtgttagcagagccgttgtaagacccacgc 1375398  T
Q  219 gtgtccggcggttacgaaattataggaagtttaatcgtcggggagagattcacggaaacgtgggaaagagacgttacagttcgtttgaaccggtct 314  Q
    |||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||| ||||||||||||||||||||||||||||||||||||    
T  1375399 gtgtccggcggttacgaaattataggaagtgtaatcgtcggggagagattcgcggaaacatgggaaagagacgttacagttcgtttgaaccggtct 1375494  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 52; Significance: 8e-21; HSPs: 6)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 195 - 314
Target Start/End: Complemental strand, 15242988 - 15242869
Alignment:
Q  195 gcagagccgttgtaagacccacgcgtgtccggcggttacgaaattataggaagtttaatcgtcggggagagattcacggaaacgtgggaaagagacgtta 294  Q
    ||||||||||| |||| | |||| ||||||||||||||||||||||   ||||| ||| |||||| |||| ||||  || ||||||||||||||| ||||    
T  15242988 gcagagccgttttaaggcacacgtgtgtccggcggttacgaaattagtagaagtgtaaccgtcggtgagatattcgtgggaacgtgggaaagagatgtta 15242889  T
Q  295 cagttcgtttgaaccggtct 314  Q
    | |||||||||||| |||||    
T  15242888 ctgttcgtttgaacaggtct 15242869  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 195 - 307
Target Start/End: Complemental strand, 15203967 - 15203855
Alignment:
Q  195 gcagagccgttgtaagacccacgcgtgtccggcggttacgaaattataggaagtttaatcgtcggggagagattcacggaaacgtgggaaagagacgtta 294  Q
    ||||||||||| |||| | |||| |||||||| ||||||||||| |   ||||| ||| |||||| |||| ||||  || ||||||||||||||| ||||    
T  15203967 gcagagccgttttaaggcacacgtgtgtccggtggttacgaaatcagtagaagtgtaaccgtcggtgagatattcgtgggaacgtgggaaagagatgtta 15203868  T
Q  295 cagttcgtttgaa 307  Q
    | |||||||||||    
T  15203867 ctgttcgtttgaa 15203855  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 190 - 314
Target Start/End: Complemental strand, 17782158 - 17782035
Alignment:
Q  190 tgttggcagagccgttgtaagacccacgcgtgtccggcggttacgaaattataggaagtttaatcgtcggggagagattcacggaaacgtgggaaagaga 289  Q
    |||| |||||||| ||||| | | |||| |||||||| ||||||||||| ||   |||| |||  |   ||||||||||| ||| | |||||||||||||    
T  17782158 tgtttgcagagccattgtatggcacacgtgtgtccggtggttacgaaatcatgacaagtgtaacagctagggagagattcgcggga-cgtgggaaagaga 17782060  T
Q  290 cgttacagttcgtttgaaccggtct 314  Q
    ||||||| ||||||||||| |||||    
T  17782059 cgttacaattcgtttgaactggtct 17782035  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 190 - 314
Target Start/End: Complemental strand, 19090785 - 19090662
Alignment:
Q  190 tgttggcagagccgttgtaagacccacgcgtgtccggcggttacgaaattataggaagtttaatcgtcggggagagattcacggaaacgtgggaaagaga 289  Q
    |||| |||||||| ||||| | | |||| |||||||| ||||||||||| ||   |||| |||  |   ||||||||||| ||| | |||||||||||||    
T  19090785 tgtttgcagagccattgtatggcacacgtgtgtccggtggttacgaaatcatgacaagtgtaacagctagggagagattcgcggga-cgtgggaaagaga 19090687  T
Q  290 cgttacagttcgtttgaaccggtct 314  Q
    ||||||| ||||||||||| |||||    
T  19090686 cgttacaattcgtttgaactggtct 19090662  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 258 - 308
Target Start/End: Original strand, 36639739 - 36639790
Alignment:
Q  258 ggggagagattcacggaaacgtgggaaa-gagacgttacagttcgtttgaac 308  Q
    ||||||| |||| ||||||||||||||| |||||||||| ||||||||||||    
T  36639739 ggggagatattcgcggaaacgtgggaaaagagacgttacggttcgtttgaac 36639790  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 261 - 314
Target Start/End: Complemental strand, 11578844 - 11578791
Alignment:
Q  261 gagagattcacggaaacgtgggaaagagacgttacagttcgtttgaaccggtct 314  Q
    ||||||||| ||| ||||||||||||| || || |||||||||||||| |||||    
T  11578844 gagagattcgcgggaacgtgggaaagaaacattgcagttcgtttgaactggtct 11578791  T

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Target: chr6 (Bit Score: 48; Significance: 2e-18; HSPs: 8)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 189 - 308
Target Start/End: Original strand, 22607792 - 22607911
Alignment:
Q  189 gtgttggcagagccgttgtaagacccacgcgtgtccggcggttacgaaattataggaagtttaatcgtcggggagagattcacggaaacgtgggaaagag 288  Q
    ||||| |||||||||||||||| | ||   |||  || ||||||| ||||  | |||||| |||||| ||||||||||||| ||| ||||| ||||||||    
T  22607792 gtgtttgcagagccgttgtaaggcacaaatgtgctcgacggttacaaaatcgtgggaagtgtaatcgccggggagagattcgcgggaacgttggaaagag 22607891  T
Q  289 acgttacagttcgtttgaac 308  Q
    ||||||||||||||||||||    
T  22607892 acgttacagttcgtttgaac 22607911  T

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Target: chr6; HSP #2
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 195 - 307
Target Start/End: Original strand, 3754441 - 3754552
Alignment:
Q  195 gcagagccgttgtaagacccacgcgtgtccggcggttacgaaattataggaagtttaatcgtcggggagagattcacggaaacgtgggaaagagacgtta 294  Q
    |||||||| ||||||||| |||| |||  | ||||||||||| || |||||||| ||| || || |||||||||| ||| ||||| ||  |||||| |||    
T  3754441 gcagagccattgtaagacacacgtgtgctctgcggttacgaatttgtaggaagtgtaaccgccgaggagagattcgcgggaacgtagg-cagagacatta 3754539  T
Q  295 cagttcgtttgaa 307  Q
    |||||||||||||    
T  3754540 cagttcgtttgaa 3754552  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 197 - 314
Target Start/End: Original strand, 10345426 - 10345543
Alignment:
Q  197 agagccgttgtaagacccacgcgtgtccggcggttacgaaattataggaagtttaatcgtcggggagagattcacggaaacgtgggaaagagacgttaca 296  Q
    |||||||||||||| | |||| ||| | | || ||| |||||| | | |||||||| || ||||||||||||   || ||| |||||||||||| |||||    
T  10345426 agagccgttgtaagtcacacgtgtgcctgacgattaggaaattgtggaaagtttaaccgccggggagagattggggggaacatgggaaagagacattaca 10345525  T
Q  297 gttcgtttgaaccggtct 314  Q
     ||||||||||| |||||    
T  10345526 attcgtttgaactggtct 10345543  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 219 - 307
Target Start/End: Complemental strand, 6109507 - 6109419
Alignment:
Q  219 gtgtccggcggttacgaaattataggaagtttaatcgtcggggagagattcacggaaacgtgggaaagagacgttacagttcgtttgaa 307  Q
    ||||| ||||||||||||||  | | |||| |||  ||||| ||||||||| ||  ||||||| ||||||| |||||||||||||||||    
T  6109507 gtgtctggcggttacgaaatcgtggaaagtgtaactgtcggcgagagattcgcgagaacgtggaaaagagatgttacagttcgtttgaa 6109419  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 195 - 282
Target Start/End: Complemental strand, 31344301 - 31344214
Alignment:
Q  195 gcagagccgttgtaagacccacgcgtgtccggcggttacgaaattataggaagtttaatcgtcggggagagattcacggaaacgtggg 282  Q
    |||||||||||||||| | |||| ||| ||| ||||||||||||  || ||||| ||| || ||| |||| |||||||| ||||||||    
T  31344301 gcagagccgttgtaaggcacacgtgtgaccgacggttacgaaatcgtaagaagtgtaaccgccggtgagatattcacgggaacgtggg 31344214  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 245 - 314
Target Start/End: Complemental strand, 7099295 - 7099226
Alignment:
Q  245 aagtttaatcgtcggggagagattcacggaaacgtgggaaagagacgttacagttcgtttgaaccggtct 314  Q
    |||| ||| |||||| |||| |||| ||  ||||||||||||||||||||  |||||||||||| |||||    
T  7099295 aagtgtaaccgtcggtgagatattcgcgagaacgtgggaaagagacgttattgttcgtttgaacaggtct 7099226  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 219 - 308
Target Start/End: Original strand, 7412455 - 7412544
Alignment:
Q  219 gtgtccggcggttacgaaattataggaagtttaatcgtcggggagagattcacggaaacgtgggaaagagacgttacagttcgtttgaac 308  Q
    ||||||| ||||||||||||  || ||||| ||| || ||| |||| |||| ||| ||| ||||||| |||||||||  |||||||||||    
T  7412455 gtgtccgccggttacgaaatcgtaagaagtgtaaccgccggtgagatattcgcgggaacttgggaaatagacgttactattcgtttgaac 7412544  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 214 - 314
Target Start/End: Original strand, 14480094 - 14480193
Alignment:
Q  214 cacgcgtgtccggcggttacgaaattataggaagtttaatcgtcggggagagattcacggaaacgtgggaaagagacgttacagttcgtttgaaccggtc 313  Q
    |||| ||||||||| ||||||||||  | | || | ||| |||||| |||| | |||||| |||||||||| ||| |||| |||||||||||||| ||||    
T  14480094 cacgtgtgtccggcagttacgaaatcgtggaaaatgtaaccgtcggagagaaactcacgggaacgtgggaa-gaggcgttgcagttcgtttgaactggtc 14480192  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 42; Significance: 0.000000000000008; HSPs: 5)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 197 - 314
Target Start/End: Original strand, 23150797 - 23150914
Alignment:
Q  197 agagccgttgtaagacccacgcgtgtccggcggttacgaaattataggaagtttaatcgtcggggagagattcacggaaacgtgggaaagagacgttaca 296  Q
    |||||||||||| | | |||| ||||||| ||||||||||||  | ||||||  || |  | | ||||||||||||| ||||||||||||||||||||||    
T  23150797 agagccgttgtatggcacacgtgtgtccgacggttacgaaatcgtgggaagtgaaacctccagtgagagattcacgggaacgtgggaaagagacgttaca 23150896  T
Q  297 gttcgtttgaaccggtct 314  Q
     || |||||||| |||||    
T  23150897 tttagtttgaacgggtct 23150914  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 197 - 314
Target Start/End: Original strand, 23562054 - 23562171
Alignment:
Q  197 agagccgttgtaagacccacgcgtgtccggcggttacgaaattataggaagtttaatcgtcggggagagattcacggaaacgtgggaaagagacgttaca 296  Q
    |||||||||||| | | |||| ||||||| ||||||||||||  | ||||||  || |  | | ||||||||||||| ||||||||||||||||||||||    
T  23562054 agagccgttgtatggcacacgtgtgtccgacggttacgaaatcgtgggaagtgaaacctccagtgagagattcacgggaacgtgggaaagagacgttaca 23562153  T
Q  297 gttcgtttgaaccggtct 314  Q
     || |||||||| |||||    
T  23562154 tttagtttgaacgggtct 23562171  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 203 - 308
Target Start/End: Complemental strand, 25881037 - 25880932
Alignment:
Q  203 gttgtaagacccacgcgtgtccggcggttacgaaattataggaagtttaatcgtcggggagagattcacggaaacgtgggaaagagacgttacagttcgt 302  Q
    |||||||| | |||| |||||||||||| || |||| |   ||||| ||| || | | |||| |||| ||| ||||||||||||||||||||| ||||||    
T  25881037 gttgtaaggcacacgtgtgtccggcggtcacaaaatcagtagaagtgtaaccgccagtgagatattcgcgggaacgtgggaaagagacgttactgttcgt 25880938  T
Q  303 ttgaac 308  Q
    ||||||    
T  25880937 ttgaac 25880932  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 227 - 314
Target Start/End: Original strand, 5356615 - 5356703
Alignment:
Q  227 cggttacgaaattataggaagtttaatcgtcggggagagattcacggaaacgtggg-aaagagacgttacagttcgtttgaaccggtct 314  Q
    ||||||||||||  | || ||| ||| |||||||||||||||| ||| | | |||| ||||||||||| |||||||||||||| |||||    
T  5356615 cggttacgaaatcgtgggtagtgtaaccgtcggggagagattcgcgggatcatgggtaaagagacgttgcagttcgtttgaactggtct 5356703  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 189 - 308
Target Start/End: Complemental strand, 10886880 - 10886760
Alignment:
Q  189 gtgttggcagagccgttgtaagacccacgcgtgtccggcggttacgaaattataggaagtttaatcgtcggggagagattcacggaaacgt-gggaaaga 287  Q
    ||||| |||||||||||| ||| | || | ||| ||| || |||||||||  | |||||| |||  ||||||||||||||| ||  ||||| ||||||||    
T  10886880 gtgtttgcagagccgttgaaaggcacatgtgtgcccgacgattacgaaatcgtgggaagtgtaacagtcggggagagattcgcgagaacgtggggaaaga 10886781  T
Q  288 gacgttacagttcgtttgaac 308  Q
    ||  |||||||||||||||||    
T  10886780 gattttacagttcgtttgaac 10886760  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 5)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 197 - 273
Target Start/End: Original strand, 31393138 - 31393214
Alignment:
Q  197 agagccgttgtaagacccacgcgtgtccggcggttacgaaattataggaagtttaatcgtcggggagagattcacgg 273  Q
    |||||||||||||| | |||||||| || ||||||||||||| || |||||| ||| ||||||||| ||||||||||    
T  31393138 agagccgttgtaaggcacacgcgtgccctgcggttacgaaatcatgggaagtgtaaccgtcggggaaagattcacgg 31393214  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 107 - 187
Target Start/End: Original strand, 15135112 - 15135199
Alignment:
Q  107 ataactaatcattattggttgtattacattacatcctttaacagcagc-------gctagcattggatattgatccaagtacaatgtg 187  Q
    |||| |||| |||||||| ||| ||||||||||||||| |||||||||       ||||||||||||| |||||||||||||||||||    
T  15135112 ataattaataattattggctgttttacattacatccttaaacagcagcagcagaagctagcattggatgttgatccaagtacaatgtg 15135199  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 261 - 308
Target Start/End: Original strand, 23167001 - 23167048
Alignment:
Q  261 gagagattcacggaaacgtgggaaagagacgttacagttcgtttgaac 308  Q
    |||| |||| ||| ||||||||||||||||||||||||||||||||||    
T  23167001 gagatattcgcgggaacgtgggaaagagacgttacagttcgtttgaac 23167048  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 189 - 314
Target Start/End: Complemental strand, 28421593 - 28421469
Alignment:
Q  189 gtgttggcagagccgttgtaagacccacgcgtgtccggcggttacgaaattataggaagtttaatcgtcggggagagattcacggaaacgtgggaaagag 288  Q
    ||||| ||| ||||| |||||| | |||| |||  ||||||||||||| || |||||||| ||| |  || |||||||||   || |||||||| | |||    
T  28421593 gtgtttgcatagccgctgtaaggcacacgtgtgctcggcggttacgaatttgtaggaagtgtaaccaccgaggagagatttgtgggaacgtgggca-gag 28421495  T
Q  289 acgttacagttcgtttgaaccggtct 314  Q
    |||||||||||||||||||| |||||    
T  28421494 acgttacagttcgtttgaactggtct 28421469  T

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Target: chr5; HSP #5
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 195 - 314
Target Start/End: Complemental strand, 31022482 - 31022362
Alignment:
Q  195 gcagagccgttgtaagacccacgcgtgtccggcggttacgaaattataggaagtttaatcgtcggggagagattcacggaaacgtggg-aaagagacgtt 293  Q
    |||||| ||||||||| | |||| ||| | |||||||||||||| |   ||||| ||| |||||| || | |||  ||| |||||||| ||||| |||||    
T  31022482 gcagagtcgttgtaaggcacacgtgtggctggcggttacgaaatcactagaagtataaccgtcggtgatatatttgcgggaacgtgggtaaagacacgtt 31022383  T
Q  294 acagttcgtttgaaccggtct 314  Q
    || |||||||||||| |||||    
T  31022382 actgttcgtttgaacaggtct 31022362  T

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Target: chr4 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 199 - 314
Target Start/End: Complemental strand, 14332048 - 14331933
Alignment:
Q  199 agccgttgtaagacccacgcgtgtccggcggttacgaaattataggaagtttaatcgtcggggagagattcacggaaacgtgggaaagagacgttacagt 298  Q
    |||| ||||| ||| ||||  |||||||||||||||||||  | ||| || ||| ||  || ||||||| ||| ||||| ||||||||||||||||||||    
T  14332048 agcctttgtacgacacacgtatgtccggcggttacgaaatcgtgggatgtataaccgctggtgagagatacacagaaacatgggaaagagacgttacagt 14331949  T
Q  299 tcgtttgaaccggtct 314  Q
    ||||| |||| |||||    
T  14331948 tcgttcgaactggtct 14331933  T

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Target: chr4; HSP #2
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 214 - 307
Target Start/End: Complemental strand, 13033684 - 13033591
Alignment:
Q  214 cacgcgtgtccggcggttacgaaattataggaagtttaatcgtcggggagagattcacggaaacgtgggaaagagacgttacagttcgtttgaa 307  Q
    |||| ||||||||||||||||||||    |||||| ||| |||| | |||| |||| ||| |||||| |||| ||||||||| |||||||||||    
T  13033684 cacgtgtgtccggcggttacgaaatcgggggaagtgtaaccgtcagtgagatattcgcgggaacgtgagaaatagacgttactgttcgtttgaa 13033591  T

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Target: chr1 (Bit Score: 37; Significance: 0.000000000008; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 195 - 314
Target Start/End: Complemental strand, 14746801 - 14746682
Alignment:
Q  195 gcagagccgttgtaa-gacccacgcgtgtccggcggttacgaaattataggaagtttaatcgtcggggagagattcacggaaacgtgggaaagagacgtt 293  Q
    ||||||||||||||| ||| |||| ||||||| ||||||| |||| | || |||| ||| |  |||  ||| ||||| || ||||||| |||||||||||    
T  14746801 gcagagccgttgtaatgacacacgtgtgtccgacggttacaaaatcagagaaagtgtaaccaccggtaagatattcatgggaacgtgg-aaagagacgtt 14746703  T
Q  294 acagttcgtttgaaccggtct 314  Q
    ||||||||||||||| |||||    
T  14746702 acagttcgtttgaactggtct 14746682  T

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Target: chr8 (Bit Score: 36; Significance: 0.00000000003; HSPs: 5)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 275 - 314
Target Start/End: Complemental strand, 1565480 - 1565441
Alignment:
Q  275 aacgtgggaaagagacgttacagttcgtttgaaccggtct 314  Q
    |||||||||||||||||||||||||||||||||| |||||    
T  1565480 aacgtgggaaagagacgttacagttcgtttgaactggtct 1565441  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 189 - 266
Target Start/End: Original strand, 31178408 - 31178485
Alignment:
Q  189 gtgttggcagagccgttgtaagacccacgcgtgtccggcggttacgaaattataggaagtttaatcgtcggggagaga 266  Q
    ||||| |||||||||||||||| | |||| ||| ||| ||||||| |||| || |||||| ||| |||||||||||||    
T  31178408 gtgtttgcagagccgttgtaaggcacacgtgtgcccgacggttacaaaatcatgggaagtgtaaacgtcggggagaga 31178485  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 189 - 266
Target Start/End: Original strand, 31178920 - 31178997
Alignment:
Q  189 gtgttggcagagccgttgtaagacccacgcgtgtccggcggttacgaaattataggaagtttaatcgtcggggagaga 266  Q
    ||||| |||||||||||||||| | |||| ||| ||| ||||||| |||| || |||||| ||| |||||||||||||    
T  31178920 gtgtttgcagagccgttgtaaggcacacgtgtgcccgacggttacaaaatcatgggaagtgtaaacgtcggggagaga 31178997  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 189 - 266
Target Start/End: Original strand, 31179432 - 31179509
Alignment:
Q  189 gtgttggcagagccgttgtaagacccacgcgtgtccggcggttacgaaattataggaagtttaatcgtcggggagaga 266  Q
    ||||| |||||||||||||||| | |||| ||| ||| ||||||| |||| || |||||| ||| |||||||||||||    
T  31179432 gtgtttgcagagccgttgtaaggcacacgtgtgcccgacggttacaaaatcatgggaagtgtaaacgtcggggagaga 31179509  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 189 - 308
Target Start/End: Complemental strand, 37296622 - 37296504
Alignment:
Q  189 gtgttggcagagccgttgtaagacccacgcgtgtccggcggttacgaaattataggaagtttaatcgtcggggagagattcacggaaacgtgggaaagag 288  Q
    ||||| |||||||||||||||| | || | |||  ||||||||| ||| |  |||||||| ||| ||||| ||||||||||  || || |||||  ||||    
T  37296622 gtgtttgcagagccgttgtaaggcacatgtgtgctcggcggttatgaattcgtaggaagtgtaaccgtcgaggagagattcgagggaatgtggg-cagag 37296524  T
Q  289 acgttacagttcgtttgaac 308  Q
    |||||||| |||||||||||    
T  37296523 acgttacaattcgtttgaac 37296504  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0233 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: scaffold0233
Description:

Target: scaffold0233; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 214 - 313
Target Start/End: Complemental strand, 16093 - 15993
Alignment:
Q  214 cacgcgtgtccggcggttacgaaattataggaagtttaatcgtcggggagagattcacggaaacgtggg-aaagagacgttacagttcgtttgaaccggt 312  Q
    |||| |||| |||||||||||||||  | |||||| ||| || ||| |||| ||||  || |||||||  ||||| |||||||||||||||||||| |||    
T  16093 cacgtgtgttcggcggttacgaaatcgtgggaagtgtaaccgccggtgagatattcgtgggaacgtggataaagatacgttacagttcgtttgaactggt 15994  T
Q  313 c 313  Q
    |    
T  15993 c 15993  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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