View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17731_low_5 (Length: 321)
Name: NF17731_low_5
Description: NF17731
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17731_low_5 |
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Alignment Details
Target: chr1 (Bit Score: 158; Significance: 5e-84; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 158; E-Value: 5e-84
Query Start/End: Original strand, 122 - 303
Target Start/End: Complemental strand, 6495861 - 6495680
Alignment:
| Q |
122 |
tgaatatgtaacagctacaggccaaaagcgcaggctgcatcacagtagcagcaacacgactgccaaaaatcagacagcaaaaggaacaaaacacttgcaa |
221 |
Q |
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| T |
6495861 |
tgaaaatgtaacagctacaggccaaaagtgcaggctgcatcacagtaacagcaacacgactgccaacaatcagacagcaaaaggaacaaaacacttgcaa |
6495762 |
T |
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| Q |
222 |
gcctcccacaagcaagaacctccacgcccacacagccagccagcagaactcaacccagacgacccagcagcgctgctgcccc |
303 |
Q |
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| T |
6495761 |
gcctcccacaagcaagaacatccacgcccacacagccagccagcataactcaacccagacgacccagcagcgctgctgcccc |
6495680 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 12 - 87
Target Start/End: Complemental strand, 6495971 - 6495896
Alignment:
| Q |
12 |
acagaccgcagcacactactacaaacaaactcgatcaaaaaacccctaagagtccaaatccaacacggagaggact |
87 |
Q |
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||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||| |
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| T |
6495971 |
acagaccgcagcacactactacaaacaaactcgataaaaaaccccctaagagtccaaatccaacacggagaggact |
6495896 |
T |
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