View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17731_low_6 (Length: 299)
Name: NF17731_low_6
Description: NF17731
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17731_low_6 |
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Alignment Details
Target: chr3 (Bit Score: 259; Significance: 1e-144; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 259; E-Value: 1e-144
Query Start/End: Original strand, 11 - 281
Target Start/End: Original strand, 25175357 - 25175627
Alignment:
| Q |
11 |
cacagacaagaaaaggtgacatataagccaagaatgtgtaaatgtacgaaaggaatacatatatgacgaagcataccgaaaaaatacatgaaaatcgtgg |
110 |
Q |
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| T |
25175357 |
cacatacaagaaaaggtgacatataagccaagaacgtgtaaatgtacgaaaggaatacatatatgacgaagcataccgaaaaaatacatgaaaatcgtgg |
25175456 |
T |
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| Q |
111 |
atgccttcgtataaacatgtaactagactcagttgaaacatgatacattcttaacaaatgaagttgaatgtcctttgcattcattttcaaacccatcttt |
210 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
25175457 |
atgccttcgtataaacatgtaactagactcagttgaaacatgatacattcttaacaaatgaagttgaatgtcctttgcattcattttcaaacccatcttt |
25175556 |
T |
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| Q |
211 |
gtcctttttcaatgttggcactaataacaaactctagaaaactcaaattgtgcacattttattcatggcta |
281 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
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| T |
25175557 |
gtcctttttcaatgttggcactaataacaaactctagaaaactcaaattgtgaacattttattcatggcta |
25175627 |
T |
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