View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17731_low_8 (Length: 233)

Name: NF17731_low_8
Description: NF17731
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17731_low_8
NF17731_low_8
[»] chr8 (5 HSPs)
chr8 (125-218)||(36121407-36121499)
chr8 (12-64)||(36121487-36121539)
chr8 (1-47)||(29512924-29512970)
chr8 (12-49)||(30085596-30085633)
chr8 (61-98)||(36122478-36122515)
[»] chr6 (2 HSPs)
chr6 (1-49)||(16548205-16548253)
chr6 (12-49)||(33898962-33898999)
[»] chr3 (2 HSPs)
chr3 (12-49)||(10853224-10853261)
chr3 (12-50)||(26519771-26519809)
[»] chr2 (4 HSPs)
chr2 (1-49)||(43436266-43436314)
chr2 (12-50)||(2213622-2213660)
chr2 (12-50)||(28127241-28127279)
chr2 (12-49)||(2215368-2215405)
[»] chr4 (1 HSPs)
chr4 (12-50)||(14072594-14072632)
[»] chr5 (1 HSPs)
chr5 (12-49)||(35760310-35760347)
[»] chr1 (4 HSPs)
chr1 (12-49)||(6166240-6166277)
chr1 (12-49)||(50406261-50406298)
chr1 (1-49)||(291705-291753)
chr1 (13-49)||(12247551-12247587)


Alignment Details
Target: chr8 (Bit Score: 82; Significance: 7e-39; HSPs: 5)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 82; E-Value: 7e-39
Query Start/End: Original strand, 125 - 218
Target Start/End: Complemental strand, 36121499 - 36121407
Alignment:
Q  125 aagagatctacaagcgtttactattgcacctgatactaaaatatatgctctagggtgattgataagtctacgtcgcaatttctacgatgaatgt 218  Q
    |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||    
T  36121499 aagatatctacaagcgtttactattgcacctgatactaaaatatatgctctagggtgattgataagtctacgtcgc-atttctacgatgaatgt 36121407  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 12 - 64
Target Start/End: Complemental strand, 36121539 - 36121487
Alignment:
Q  12 caaaatcaattctcaacaccgctataccaaacacacacagaagatatctacaa 64  Q
    |||||||||||||| |||||||| ||||||||||||||| |||||||||||||    
T  36121539 caaaatcaattctcgacaccgctgtaccaaacacacacaaaagatatctacaa 36121487  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 47
Target Start/End: Original strand, 29512924 - 29512970
Alignment:
Q  1 tcacttttaaccaaaatcaattctcaacaccgctataccaaacacac 47  Q
    ||||||||||||||||||||||||| |||||||   |||||||||||    
T  29512924 tcacttttaaccaaaatcaattctccacaccgcacaaccaaacacac 29512970  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 12 - 49
Target Start/End: Complemental strand, 30085633 - 30085596
Alignment:
Q  12 caaaatcaattctcaacaccgctataccaaacacacac 49  Q
    ||||||||||||||| | ||||||||||||||||||||    
T  30085633 caaaatcaattctcaccgccgctataccaaacacacac 30085596  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 61 - 98
Target Start/End: Complemental strand, 36122515 - 36122478
Alignment:
Q  61 acaaacggatagacggacacgacttgcaacctgactct 98  Q
    |||||||||||||||| |||||||||||||| ||||||    
T  36122515 acaaacggatagacgggcacgacttgcaacccgactct 36122478  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 37; Significance: 0.000000000005; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 1 - 49
Target Start/End: Original strand, 16548205 - 16548253
Alignment:
Q  1 tcacttttaaccaaaatcaattctcaacaccgctataccaaacacacac 49  Q
    |||||||||||||||||||||||||  |||||| |||||||||||||||    
T  16548205 tcacttttaaccaaaatcaattctccccaccgccataccaaacacacac 16548253  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 12 - 49
Target Start/End: Complemental strand, 33898999 - 33898962
Alignment:
Q  12 caaaatcaattctcaacaccgctataccaaacacacac 49  Q
    ||||||||||||||| ||||||||||||||||||||||    
T  33898999 caaaatcaattctcaccaccgctataccaaacacacac 33898962  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 34; Significance: 0.0000000003; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 12 - 49
Target Start/End: Complemental strand, 10853261 - 10853224
Alignment:
Q  12 caaaatcaattctcaacaccgctataccaaacacacac 49  Q
    ||||||||||||||| ||||||||||||||||||||||    
T  10853261 caaaatcaattctcaccaccgctataccaaacacacac 10853224  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 12 - 50
Target Start/End: Original strand, 26519771 - 26519809
Alignment:
Q  12 caaaatcaattctcaacaccgctataccaaacacacaca 50  Q
    ||||||||||||||  |||||||||||||||||||||||    
T  26519771 caaaatcaattctccccaccgctataccaaacacacaca 26519809  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 33; Significance: 0.000000001; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 49
Target Start/End: Complemental strand, 43436314 - 43436266
Alignment:
Q  1 tcacttttaaccaaaatcaattctcaacaccgctataccaaacacacac 49  Q
    |||||||||| ||||||||||||||  |||||| |||||||||||||||    
T  43436314 tcacttttaatcaaaatcaattctcgccaccgccataccaaacacacac 43436266  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 12 - 50
Target Start/End: Original strand, 2213622 - 2213660
Alignment:
Q  12 caaaatcaattctcaacaccgctataccaaacacacaca 50  Q
    ||||||||||||||  |||||||||||||||||||||||    
T  2213622 caaaatcaattctccccaccgctataccaaacacacaca 2213660  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 12 - 50
Target Start/End: Complemental strand, 28127279 - 28127241
Alignment:
Q  12 caaaatcaattctcaacaccgctataccaaacacacaca 50  Q
    ||||||||||||||  |||||||||||||||||||||||    
T  28127279 caaaatcaattctccccaccgctataccaaacacacaca 28127241  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 12 - 49
Target Start/End: Original strand, 2215368 - 2215405
Alignment:
Q  12 caaaatcaattctcaacaccgctataccaaacacacac 49  Q
    |||||||||||||||  |||||||||||||||||||||    
T  2215368 caaaatcaattctcacaaccgctataccaaacacacac 2215405  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 12 - 50
Target Start/End: Original strand, 14072594 - 14072632
Alignment:
Q  12 caaaatcaattctcaacaccgctataccaaacacacaca 50  Q
    ||||||||||||||| |||||| ||||||||||||||||    
T  14072594 caaaatcaattctcaccaccgccataccaaacacacaca 14072632  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 12 - 49
Target Start/End: Original strand, 35760310 - 35760347
Alignment:
Q  12 caaaatcaattctcaacaccgctataccaaacacacac 49  Q
    ||||||||||||||  ||||||||||||||||||||||    
T  35760310 caaaatcaattctccccaccgctataccaaacacacac 35760347  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 30; Significance: 0.00000008; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 12 - 49
Target Start/End: Original strand, 6166240 - 6166277
Alignment:
Q  12 caaaatcaattctcaacaccgctataccaaacacacac 49  Q
    ||||||||||||||| |||||| |||||||||||||||    
T  6166240 caaaatcaattctcaccaccgcgataccaaacacacac 6166277  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 12 - 49
Target Start/End: Original strand, 50406261 - 50406298
Alignment:
Q  12 caaaatcaattctcaacaccgctataccaaacacacac 49  Q
    ||||||||||||||  ||||||||||||||||||||||    
T  50406261 caaaatcaattctcgccaccgctataccaaacacacac 50406298  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 49
Target Start/End: Complemental strand, 291753 - 291705
Alignment:
Q  1 tcacttttaaccaaaatcaattctcaacaccgctataccaaacacacac 49  Q
    |||||||||| ||||||||||||||  |||| | |||||||||||||||    
T  291753 tcacttttaatcaaaatcaattctcgccaccaccataccaaacacacac 291705  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 13 - 49
Target Start/End: Original strand, 12247551 - 12247587
Alignment:
Q  13 aaaatcaattctcaacaccgctataccaaacacacac 49  Q
    |||||||||| ||| ||||||||||||||||||||||    
T  12247551 aaaatcaattttcatcaccgctataccaaacacacac 12247587  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University