View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17732_high_1 (Length: 373)
Name: NF17732_high_1
Description: NF17732
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17732_high_1 |
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Alignment Details
Target: chr4 (Bit Score: 192; Significance: 1e-104; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 192; E-Value: 1e-104
Query Start/End: Original strand, 158 - 357
Target Start/End: Original strand, 34825890 - 34826089
Alignment:
| Q |
158 |
aacaatcactaattattctagatttactgcagttgcaccaagactaattgactattcaattccaggggcattttgagctttttgattttcatgcatcatg |
257 |
Q |
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| T |
34825890 |
aacaatcactaattattctagatttactgcagttgcaccaagactaattgactattcaattccaggggcattttgagctttttgattttcatgcatcata |
34825989 |
T |
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| Q |
258 |
acatattcacggagtctctcagctttttgtctcattgaatcaataatctcttccgtttcatcatgtatttgttttggcaaataaacctccaagaaatcaa |
357 |
Q |
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| T |
34825990 |
acatattcacggagtctctcagctttttgtctcattgaatcaataatatcttccgtttcatcatgtatttgttttggcaaataaacctccaagaaatcaa |
34826089 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 233 - 357
Target Start/End: Original strand, 34822896 - 34823020
Alignment:
| Q |
233 |
agctttttgattttcatgcatcatgacatattcacggagtctctcagctttttgtctcattgaatcaataatctcttccgtttcatcatgtatttgtttt |
332 |
Q |
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|||||| ||||| | || ||| ||||| || || ||||||||||| ||||||||| |||| |||||||||||||||||||||||||||||||| |||||| |
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| T |
34822896 |
agctttctgattctgatacattatgacgtactcgcggagtctctcggctttttgtttcatggaatcaataatctcttccgtttcatcatgtatctgtttt |
34822995 |
T |
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| Q |
333 |
ggcaaataaacctccaagaaatcaa |
357 |
Q |
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| T |
34822996 |
ggcaaataaacttccaagaaatcaa |
34823020 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 106 - 161
Target Start/End: Original strand, 34825814 - 34825869
Alignment:
| Q |
106 |
aagtatgccttaccagacagaccattaacaagttaacaaaatctaactaacaaaca |
161 |
Q |
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| T |
34825814 |
aagtaggccttaccagacagacccttaacgagttaacaaaatctaactaccaaaca |
34825869 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 73; Significance: 3e-33; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 233 - 357
Target Start/End: Original strand, 28945533 - 28945657
Alignment:
| Q |
233 |
agctttttgattttcatgcatcatgacatattcacggagtctctcagctttttgtctcattgaatcaataatctcttccgtttcatcatgtatttgtttt |
332 |
Q |
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|||||| ||||| | || ||| ||||| || || ||||||||||| ||||||||| |||| |||||||||||||||||||||||||||||||| |||||| |
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| T |
28945533 |
agctttctgattctgatacattatgacgtactcgcggagtctctcggctttttgtgtcatggaatcaataatctcttccgtttcatcatgtatctgtttt |
28945632 |
T |
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| Q |
333 |
ggcaaataaacctccaagaaatcaa |
357 |
Q |
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||||||||||| ||||||||||||| |
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| T |
28945633 |
ggcaaataaacttccaagaaatcaa |
28945657 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 55; Significance: 2e-22; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 267 - 357
Target Start/End: Complemental strand, 42233096 - 42233006
Alignment:
| Q |
267 |
cggagtctctcagctttttgtctcattgaatcaataatctcttccgtttcatcatgtatttgttttggcaaataaacctccaagaaatcaa |
357 |
Q |
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||||||| ||| |||||||||||||| |||||||| ||||||| ||||||||||||||| ||||| |||||| |||| ||||||||||||| |
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| T |
42233096 |
cggagtccctcggctttttgtctcatggaatcaatgatctctttcgtttcatcatgtatctgtttcggcaaacaaacttccaagaaatcaa |
42233006 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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