View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17732_high_3 (Length: 217)
Name: NF17732_high_3
Description: NF17732
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17732_high_3 |
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| [»] scaffold0127 (1 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 154; Significance: 7e-82; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 154; E-Value: 7e-82
Query Start/End: Original strand, 17 - 207
Target Start/End: Original strand, 5748467 - 5748653
Alignment:
| Q |
17 |
aggaataaaagaaacgataacgggaatacaacgaggcatgatctttgtttacggggttcgaccaataatggttcctttctctacgattatagagcagcta |
116 |
Q |
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| T |
5748467 |
aggaataaaagaaacgataatgggaatacaacgaggcatgatctttgtttacggggttcgaccaataatgattcctttctctacgattatagagcagcta |
5748566 |
T |
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| Q |
117 |
tagttccatatatttgaaaaatatgggaggcgcgcaataggactacatatcttctcttcaaagacttcagatgtggaagatagttgatgat |
207 |
Q |
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| T |
5748567 |
tagttccgtatatttgaaaaatatgggaggcgcgcaatagga----ttatcttctctccaaagacttcagatgtggaagatagttgatgat |
5748653 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 44 - 123
Target Start/End: Original strand, 5858800 - 5858879
Alignment:
| Q |
44 |
acaacgaggcatgatctttgtttacggggttcgaccaataatggttcctttctctacgattatagagcagctatagttcc |
123 |
Q |
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| T |
5858800 |
acaatgagacatgatctctgtttacggggttcgaccaataattgtgcctttctctacgactatagggcggttatagttcc |
5858879 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0127 (Bit Score: 147; Significance: 1e-77; HSPs: 1)
Name: scaffold0127
Description:
Target: scaffold0127; HSP #1
Raw Score: 147; E-Value: 1e-77
Query Start/End: Original strand, 17 - 207
Target Start/End: Complemental strand, 19796 - 19607
Alignment:
| Q |
17 |
aggaataaaagaaacgataacgggaatacaacgaggcatgatctttgtt---tacggggttcgaccaataatggttcctttctctacgattatagagcag |
113 |
Q |
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| T |
19796 |
aggaataaaagaaacgataatgggaatacaccgaggcatgatctttgttaattacggggttcgaccaataatggttcctttctctacgattatagagcag |
19697 |
T |
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| Q |
114 |
ctatagttccatatatttgaaaaatatgggaggcgcgcaataggactacatatcttctcttcaaagacttcagatgtggaagatagttgatgat |
207 |
Q |
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| T |
19696 |
ctatagttccgtatatttgaaaaatatgggaggcgcacaataggac----tatcttctcttcaaagacttcagatgtggaagatagttgatgat |
19607 |
T |
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