View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17733_low_1 (Length: 827)
Name: NF17733_low_1
Description: NF17733
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17733_low_1 |
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| [»] scaffold0321 (2 HSPs) |
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Alignment Details
Target: scaffold0321 (Bit Score: 548; Significance: 0; HSPs: 2)
Name: scaffold0321
Description:
Target: scaffold0321; HSP #1
Raw Score: 548; E-Value: 0
Query Start/End: Original strand, 14 - 601
Target Start/End: Complemental strand, 16589 - 16003
Alignment:
| Q |
14 |
tactcaataaatgtatttaatacaaaaatgcttatataaatttttgtgaccgcaaccatgattaatatctataaatatataaagagatggttcgaaaaac |
113 |
Q |
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| T |
16589 |
tactcaataaatgtatttaatacaaaa-tgcttatataaatttttgtgaccgcaaccatgattaatatctataaatatataaagagatggttcgaaaaac |
16491 |
T |
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| Q |
114 |
catcaagataataaatgattgttgaagagcagtacagatataggacgtggaagatcacatgataatgtctagttaaaaatacatgtgtatgaaaaatgca |
213 |
Q |
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| T |
16490 |
catcaagtagataaatgattgttgaagagcagtacaaatataggacgtgaaagatcacatgataatgtctagttaaaaatacatgtgtatgaaaaatgca |
16391 |
T |
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| Q |
214 |
tatgcctatggtataatcatacttcatccacctatgtcaaatcattttcatcaatagactcttcttcagctgcttcgactccactatggcggattctgca |
313 |
Q |
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| T |
16390 |
tatgcctatggtataatcatacttcatccacctatgtcaaatcattttcatcaatagactcttcttcagctgcttcgactccactatggcggattctgca |
16291 |
T |
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| Q |
314 |
gcagtaacccacaaagaacgctgcaatgacaccaatcaccaaaacagcccaacccagacctccgaatgaacttgaggccggtggagaggccggtggaggt |
413 |
Q |
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| T |
16290 |
gcagtaacccacaaagaacgctgcaatgacaccaatcaccaaaacagcccaacccagacctccgaatgaacttgaggccggtggagaggcctgtggaggt |
16191 |
T |
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| Q |
414 |
ggaggaagaggtgacttcatcggtggaggtgcaggaagaggtgacttcataggagcctgctgatgtggaggtggaggtgaaggaatgtgtgtgaagttaa |
513 |
Q |
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| T |
16190 |
ggaggaagaggtgacttcatcggtggaggtgcaggaagaggtgacttcataggagcctgctgatgtggaggtggaggtgaaggaatgtgtgtgaagttaa |
16091 |
T |
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| Q |
514 |
cgaatggattttgtggtgatggagcataatctcctaccaccagtgtagccaaacacagccacagtaaaagtaccttcaaaaaagtgaa |
601 |
Q |
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| T |
16090 |
cgaatggattttgtggtgatggagcataatctccaaccaccagtgtagccaaacacagccacagtaaaagtaccttaaaaaaagtgaa |
16003 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0321; HSP #2
Raw Score: 182; E-Value: 6e-98
Query Start/End: Original strand, 621 - 810
Target Start/End: Complemental strand, 15927 - 15738
Alignment:
| Q |
621 |
ttatatacaaacgttatctaccttgcttcttatttgtttttgacgaaaaaataataaagagaactgctatatatagaataatagaaacaatgttaagcat |
720 |
Q |
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| T |
15927 |
ttatatacaaactttatctaccttgcttcttatttgtttttgacgaaaaaataataaagagaactgctatatatagaataatagaaacaatgttaagcat |
15828 |
T |
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| Q |
721 |
tgctatatcgtttaccaacaaaagaggattcacctctatcatccatccagtgattgacaaaagaggattcaaacaaggattggcagatta |
810 |
Q |
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| T |
15827 |
tgctatatcgtttaccgacaaaagaggattcacctctatcatccatccagtgattgacaaaagaggattcaaacaaggattggcagatta |
15738 |
T |
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