View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17733_low_2 (Length: 451)
Name: NF17733_low_2
Description: NF17733
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17733_low_2 |
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Alignment Details
Target: chr1 (Bit Score: 163; Significance: 7e-87; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 163; E-Value: 7e-87
Query Start/End: Original strand, 15 - 181
Target Start/End: Original strand, 8407515 - 8407681
Alignment:
| Q |
15 |
aatatagatactgatcgaagtggcacaatcacatatgaagaactaaaatctggactgtccaaattgggatccaagcttagtgaatctgaaataaagcagc |
114 |
Q |
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| T |
8407515 |
aatatagataccgatcgaagtggcacaatcacatatgaagaactaaaatctggactgtccaaattgggatccaagcttagtgaatctgaaataaagcagc |
8407614 |
T |
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| Q |
115 |
taatggatgctgtaagttcagtctccggcagttttagaaattaagaacaagtttgatttgagacaac |
181 |
Q |
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| T |
8407615 |
taatggatgctgtaagttcagtctccggcagttttagaaattaagaacaagtttgatttgagacaac |
8407681 |
T |
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Target: chr1; HSP #2
Raw Score: 129; E-Value: 1e-66
Query Start/End: Original strand, 311 - 451
Target Start/End: Original strand, 8407822 - 8407962
Alignment:
| Q |
311 |
attttctcacatcaaacaaacactagtgtttctggtcttttttcttcatgaagaaagtataaaataagaacttacatagctttcctaattcacatgtttg |
410 |
Q |
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| T |
8407822 |
attttctcacatcaaacagacactagtgtttctgatcttttttcttcatgaagaaagtataaaataagaacttacatagttttcctaattcacatgtttg |
8407921 |
T |
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| Q |
411 |
gtcaggctgatgttgacaagaatggaactattgactatcat |
451 |
Q |
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| T |
8407922 |
gtcaggctgatgttgacaagaatggaactattgactatcat |
8407962 |
T |
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