View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17733_low_4 (Length: 271)
Name: NF17733_low_4
Description: NF17733
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17733_low_4 |
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Alignment Details
Target: chr2 (Bit Score: 225; Significance: 1e-124; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 225; E-Value: 1e-124
Query Start/End: Original strand, 18 - 242
Target Start/End: Complemental strand, 5821191 - 5820967
Alignment:
| Q |
18 |
aatggtatcaccagacattcttccaataacctctccactggttgcttcagtgtcaaagtaggaaatatcttgctttagtatagttttcaagtacaagcca |
117 |
Q |
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| T |
5821191 |
aatggtatcaccagacattcttccaataacctctccactggttgcttcagtgtcaaagtaggaaatatcttgctttagtatagttttcaagtacaagcca |
5821092 |
T |
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| Q |
118 |
cgaatccttgcagcttgtctttctcctgtcaccatccaacatgctacctctgcagcatcaaacaaaaaattaccctcgtattaggattctacaattacat |
217 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5821091 |
cgaatccttgcagcttgtctttctcctgtcaccatccaacatgctacctctgcagcatcaaacaaaaaattaccctcgtattaggattctacaattacat |
5820992 |
T |
|
| Q |
218 |
tgctttataacaaataattaagcag |
242 |
Q |
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||||||||||||||||||||||||| |
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| T |
5820991 |
tgctttataacaaataattaagcag |
5820967 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 84; E-Value: 6e-40
Query Start/End: Original strand, 25 - 184
Target Start/End: Complemental strand, 5764260 - 5764101
Alignment:
| Q |
25 |
tcaccagacattcttccaataacctctccactggttgcttcagtgtcaaagtaggaaatatcttgctttagtatagttttcaagtacaagccacgaatcc |
124 |
Q |
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| T |
5764260 |
tcaccagacattctaccaattacttctcctgtgtttgtttcagtgtcaaagaatgcaatatcctgctttaatatggttttcaagtacaaactacgaatcc |
5764161 |
T |
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| Q |
125 |
ttgcagcttgtctttctcctgtcaccatccaacatgctacctctgcagcatcaaacaaaa |
184 |
Q |
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| T |
5764160 |
ttgcagattgtctttctcctgtcaccatccaacatgatacctctgcagcatggaacaaaa |
5764101 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 79; E-Value: 5e-37
Query Start/End: Original strand, 25 - 175
Target Start/End: Original strand, 5833568 - 5833718
Alignment:
| Q |
25 |
tcaccagacattcttccaataacctctccactggttgcttcagtgtcaaagtaggaaatatcttgctttagtatagttttcaagtacaagccacgaatcc |
124 |
Q |
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| T |
5833568 |
tcaccagacattctaccaattacctctcctgtgtttgtttcagtatcaaagaatgcaatatcctgttgtaatatggttttcaagtacaagctacgaatcc |
5833667 |
T |
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| Q |
125 |
ttgcagcttgtctttctcctgtcaccatccaacatgctacctctgcagcat |
175 |
Q |
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| T |
5833668 |
ttgcagcttgtctttctcctgttaccatccaacatgttacctctgcagcat |
5833718 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 79; Significance: 5e-37; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 79; E-Value: 5e-37
Query Start/End: Original strand, 25 - 175
Target Start/End: Original strand, 29331271 - 29331421
Alignment:
| Q |
25 |
tcaccagacattcttccaataacctctccactggttgcttcagtgtcaaagtaggaaatatcttgctttagtatagttttcaagtacaagccacgaatcc |
124 |
Q |
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| T |
29331271 |
tcaccagacattctactaattacctctcctgtgtttgtttcagtgtcaaagaatgcaatatcctgctttaatatggttttcaagtacaaactacgaatcc |
29331370 |
T |
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| Q |
125 |
ttgcagcttgtctttctcctgtcaccatccaacatgctacctctgcagcat |
175 |
Q |
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| T |
29331371 |
tcgcagattgtctttctcctgtcaccatccaacatgatacctctgcagcat |
29331421 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 37; Significance: 0.000000000006; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 22 - 158
Target Start/End: Original strand, 38527216 - 38527352
Alignment:
| Q |
22 |
gtatcaccagacattcttccaataacctctccactggttgcttcagtgtcaaagtaggaaatatcttgctttagtatagttttcaagtacaagccacgaa |
121 |
Q |
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| T |
38527216 |
gtatcaccagacattcttcctacaacttctcctgtgtttgtttctttatcaaagaaagtaacatcttgtcttaatattgttttcaaatacaatcctctta |
38527315 |
T |
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| Q |
122 |
tccttgcagcttgtctttctcctgtcaccatccaaca |
158 |
Q |
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| T |
38527316 |
ttcttgcagcttgtctttctcctgttaccatccaaca |
38527352 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 22 - 158
Target Start/End: Original strand, 38568517 - 38568653
Alignment:
| Q |
22 |
gtatcaccagacattcttccaataacctctccactggttgcttcagtgtcaaagtaggaaatatcttgctttagtatagttttcaagtacaagccacgaa |
121 |
Q |
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|||||||| |||||||| || ||||| ||||| || ||| ||| | |||||| | | || |||||| ||| ||| |||||||| ||||| || | | |
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| T |
38568517 |
gtatcacctgacattctccctataacttctcctgtgtttgtttctttatcaaagaaagtaacatcttgtcttaatattgttttcaaatacaatcctctta |
38568616 |
T |
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| Q |
122 |
tccttgcagcttgtctttctcctgtcaccatccaaca |
158 |
Q |
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| T |
38568617 |
ttcttgcagcttgtctttctcctgtaaccatccaaca |
38568653 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 22 - 54
Target Start/End: Complemental strand, 51198078 - 51198046
Alignment:
| Q |
22 |
gtatcaccagacattcttccaataacctctcca |
54 |
Q |
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| T |
51198078 |
gtatcaccagacattcttccaacaacctctcca |
51198046 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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