View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17733_low_5 (Length: 245)
Name: NF17733_low_5
Description: NF17733
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17733_low_5 |
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Alignment Details
Target: chr3 (Bit Score: 183; Significance: 4e-99; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 183; E-Value: 4e-99
Query Start/End: Original strand, 1 - 240
Target Start/End: Original strand, 47832691 - 47832930
Alignment:
| Q |
1 |
tcatcttttcattttagtatgacagatttgtctaacttacttatttacttgtatgagatttatatatatgctttcagtaccatggttactatagaaatta |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
47832691 |
tcatcttttcattttagtatgacagatttgtctaacttacttatttacttgtatgagatttatatatatgctttcagtaccatggttactatagaaatta |
47832790 |
T |
|
| Q |
101 |
aacccaattttaatcacaaatttaatagcacatcaaatnnnnnnnntaactaagtgaaaatgaattttacagtacattctgtgattttactaactattga |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||| |||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
47832791 |
aacccaattttaatcacaaatttaatagcacatcaaataaaaaaaataaccaagtgaaaatgaattttacagtacattctgtgattttactaactattga |
47832890 |
T |
|
| Q |
201 |
cactgctacnnnnnnnccttcagtatacgagtattctctg |
240 |
Q |
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|||||||| ||||||||||||||||||| |||| |
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| T |
47832891 |
tactgctactttttttccttcagtatacgagtattttctg |
47832930 |
T |
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