View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17733_low_6 (Length: 204)
Name: NF17733_low_6
Description: NF17733
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17733_low_6 |
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| [»] chr3 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 187; Significance: 1e-101; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 187; E-Value: 1e-101
Query Start/End: Original strand, 1 - 204
Target Start/End: Original strand, 47832413 - 47832620
Alignment:
| Q |
1 |
tattgttatggccagattaatatatatgtagatattgacatttaaagatgacatat----gtgtggtaagtggtaacatatataccatatacaatgcttg |
96 |
Q |
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| T |
47832413 |
tattgttatggccagattaatatatatgtagatattgacatttaaagatgacatatatatgtgtggtaagtggtaacatatataccatatacaatgcttg |
47832512 |
T |
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| Q |
97 |
ttaccacatgtacaatagatcattttcttatacaacaatttgttcattaataattggaattgagaccgatgaatttgtgcttagataattagaagtgaag |
196 |
Q |
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||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
47832513 |
ttaccacatgtacaagagatcattttcttatacaacaatttgttcattaataattggaattgagaccgatgaatttgtgcttagataattagaagtgaag |
47832612 |
T |
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| Q |
197 |
catataac |
204 |
Q |
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|||||||| |
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| T |
47832613 |
catataac |
47832620 |
T |
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