View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17734_high_13 (Length: 380)
Name: NF17734_high_13
Description: NF17734
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17734_high_13 |
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Alignment Details
Target: chr5 (Bit Score: 282; Significance: 1e-158; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 282; E-Value: 1e-158
Query Start/End: Original strand, 4 - 364
Target Start/End: Original strand, 34525791 - 34526154
Alignment:
| Q |
4 |
tggacatcatcagtttatatgcatgtttaatattacagtaaattttgacaatgagttataataattttgcagaaactatacttttaaacttttacaaaat |
103 |
Q |
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| T |
34525791 |
tggatatcataagtttatatgcatgtttaatattacggtaaattttgacgatgagatataataattttgcagaaactatacttttaaacttttacaaaat |
34525890 |
T |
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| Q |
104 |
tacgataactcactgtaattttaataaactgactataatatcatacatacatnnnnnnnntaag---tatacaagtgaaacctaatgaattatataatat |
200 |
Q |
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|||||||||||||||||||||||||||| | ||||||||||| |||||||| ||| ||||||||||||||||||||||||||||||||| |
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| T |
34525891 |
tacgataactcactgtaattttaataaatcggctataatatcaaacatacattaaaaaaaaaagaagtatacaagtgaaacctaatgaattatataatat |
34525990 |
T |
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| Q |
201 |
ttggtgagatcaccaacataagtcactcatattgaaacttagtagtatgagagaatccaaatcttgtggatatttagatttatggttagagtttaatgca |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
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| T |
34525991 |
ttggtgagatcaccaacataagtcactcatattgaaacttagtagtatgagagaatccaaatctggtggatatttagatttatggttagagtttaatgca |
34526090 |
T |
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| Q |
301 |
gttgagataatgagaggagttcatcagaaactagaggttgatctgacaaatagaaggtacctag |
364 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34526091 |
gttgagataatgagaggagttcatcagaaactagaggttgatctgacaaatagaaggtacctag |
34526154 |
T |
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