View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF17734_high_16 (Length: 344)
Name: NF17734_high_16
Description: NF17734
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17734_high_16 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 275; Significance: 1e-154; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 275; E-Value: 1e-154
Query Start/End: Original strand, 18 - 338
Target Start/End: Complemental strand, 45918476 - 45918156
Alignment:
| Q |
18 |
taaattgcacgagaatcatatttttgatgtgaaacccatttctataaatcattggttccatgttggtgctacgtaacaaccaaacattggaaagaatatt |
117 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
45918476 |
taaattgcacgagaatcatatttttgatgtgaaacccatttctataaatcattggttccatgttggtgctacgtaacaaccaaacattggaaagaatatt |
45918377 |
T |
|
| Q |
118 |
caataacgatataaactgtacatgttcaaatttacgtcgctccacttttgtgcatatcaaacaatatgctagagagtctaattagataagcttaaacaaa |
217 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
45918376 |
caataacgatataaactgtacatgttcaaatttacgtcgctccacttttgtgcatatcaaacaatatgctagagagtctaattagataagcttaaacaaa |
45918277 |
T |
|
| Q |
218 |
ttaatattttgtnnnnnnnttattctaataatttatgtaannnnnnnaacaatgtagataagatattattgtagcaactttgtggttaattttagatcac |
317 |
Q |
| |
|
|||||||||||| ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
45918276 |
ttaatattttgtaaaaaaattattctaataatttatgtaatttttttaacaatgtagataagatattattgtagcaactttgtggttaattttagatcac |
45918177 |
T |
|
| Q |
318 |
aatttgtttaatttcttctct |
338 |
Q |
| |
|
||||||||| ||||||||||| |
|
|
| T |
45918176 |
aatttgtttgatttcttctct |
45918156 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University