View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17734_high_18 (Length: 322)
Name: NF17734_high_18
Description: NF17734
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17734_high_18 |
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Alignment Details
Target: chr6 (Bit Score: 292; Significance: 1e-164; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 292; E-Value: 1e-164
Query Start/End: Original strand, 15 - 306
Target Start/End: Complemental strand, 22416444 - 22416153
Alignment:
| Q |
15 |
tatcatagtaagcgacaactccaaggatctaaaattaagaattaagttgttttggtaagtccaatgcttatttgtgtctccaaacacgacctttattgta |
114 |
Q |
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| T |
22416444 |
tatcatagtaagcgacaactccaaggatctaaaattaagaattaagttgttttggtaagtccaatgcttatttgtgtctccaaacacgacctttattgta |
22416345 |
T |
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| Q |
115 |
gatccatagtacaccttcaaataaacaacaataattgaagtggcaaagaaacgttcatacttgttatgactctaagcatcgaaagtggaaatgaagccct |
214 |
Q |
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| T |
22416344 |
gatccatagtacaccttcaaataaacaacaataattgaagtggcaaagaaacgttcatacttgttatgactctaagcatcgaaagtggaaatgaagccct |
22416245 |
T |
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| Q |
215 |
tcactaacttaataaatttctttgctttggatggctcaaaaaactcaaccccatgaaaaccttcttcctgaaaatctttgacaacttccaca |
306 |
Q |
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| T |
22416244 |
tcactaacttaataaatttctttgctttggatggctcaaaaaactcaaccccatgaaaaccttcttcctgaaaatctttgacaacttccaca |
22416153 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 57; E-Value: 9e-24
Query Start/End: Original strand, 116 - 306
Target Start/End: Complemental strand, 22400507 - 22400319
Alignment:
| Q |
116 |
atccatagtacaccttcaaataaacaacaataattgaag-tggcaaagaaacgttcatacttgttatgactctaagcatcgaaagtggaaatgaagccct |
214 |
Q |
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||||||| ||||| |||||||||| | ||||||| ||| | |||||||||||| || || |||| ||| |||||||||||| ||| ||||| || | |
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| T |
22400507 |
atccataatacacgttcaaataaaggaaaataattcaaggtagcaaagaaacgt-caaacatgtt--gaccctaagcatcgaactaggagatgaaacctt |
22400411 |
T |
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| Q |
215 |
tcactaacttaataaatttctttgctttggatggctcaaaaaactcaaccccatgaaaaccttcttcctgaaaatctttgacaacttccaca |
306 |
Q |
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|||| | || |||||| ||||||||||||||| |||||||||||||||| ||||||||||| ||||| |||||||| || || ||||||||| |
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| T |
22400410 |
tcaccacctcaataaagttctttgctttggatagctcaaaaaactcaactccatgaaaaccatcttcttgaaaatccttcaccacttccaca |
22400319 |
T |
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