View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17734_high_2 (Length: 636)

Name: NF17734_high_2
Description: NF17734
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17734_high_2
NF17734_high_2
[»] chr6 (4 HSPs)
chr6 (12-350)||(22416708-22417047)
chr6 (421-636)||(22416421-22416637)
chr6 (440-513)||(15131392-15131468)
chr6 (537-569)||(5976570-5976602)
[»] chr3 (2 HSPs)
chr3 (470-514)||(25146377-25146421)
chr3 (472-508)||(45693452-45693488)
[»] chr2 (2 HSPs)
chr2 (465-532)||(32627657-32627724)
chr2 (535-568)||(44984437-44984470)
[»] chr5 (2 HSPs)
chr5 (471-564)||(27005885-27005979)
chr5 (465-533)||(8679156-8679224)
[»] scaffold0004 (1 HSPs)
scaffold0004 (499-564)||(339072-339137)
[»] chr1 (2 HSPs)
chr1 (500-564)||(21516721-21516786)
chr1 (440-511)||(46056417-46056491)


Alignment Details
Target: chr6 (Bit Score: 312; Significance: 1e-175; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 312; E-Value: 1e-175
Query Start/End: Original strand, 12 - 350
Target Start/End: Complemental strand, 22417047 - 22416708
Alignment:
Q  12 cacagacaccacgaatacaattcagcgaatcgacgaagatgcaaagcaccgacgtcgttttgataccttacaccagaagtgtgggttaagacaaccgtaa 111  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||    
T  22417047 cacagacaccacgaatacaattcagcgaatcgacgaagatgcaaagcaccgacgtcgttttgataccctacacgagaagtgtgggttaagacaaccgtaa 22416948  T
Q  112 aaggttcaaccaccaaaacaaccgctgctatcattcgaaaacaacgacagaaacggccaatttggatgtgggtggtgcgaagggcagcgcgccactcatc 211  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||| ||||||||||||||||||||    
T  22416947 aaggttcaaccaccaaaacaaccgctgctatcattcgaaaacaacgacaaaaacggccgatttggatgtgggtggtgcggagggcagcgcgccactcatc 22416848  T
Q  212 acatcaccgcaccggaaggattacatatggtaaggatggagtttggattaaaggggatggaaaaagatg-aggcgcttgtgaagtttagagagaaggcgg 310  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||    
T  22416847 acatcaccgcaccggaaggattacatatggtaaggatggagtttggattaaaggggatggaaaaagatgaaggcgcttgtgaagtttagagagaaggcgg 22416748  T
Q  311 atgatattttttaaagagagcccattatcatatcgacttt 350  Q
    ||||||||||||||||||||||||||||||||||||||||    
T  22416747 atgatattttttaaagagagcccattatcatatcgacttt 22416708  T

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Target: chr6; HSP #2
Raw Score: 176; E-Value: 2e-94
Query Start/End: Original strand, 421 - 636
Target Start/End: Complemental strand, 22416637 - 22416421
Alignment:
Q  421 gaaagaagaaaatataatttataagcttaaatgctatttgaaacgtctaaaaaataa-gatataagttggtgaaataaactataagctcgtgataacatg 519  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||| || || ||||||||||||||||||||||||| |||||||||||||    
T  22416637 gaaagaagaaaatataatttataagcttaaatgctatttgaaacgtctaaaaaacaaagacataagttggtgaaataaactataagttcgtgataacatg 22416538  T
Q  520 acatttaccaaacattattttttaatcatacaaacttataagctacaagttttannnnnnnaccttgccaaacaggccctaattctccaaaattatcata 619  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||       |||||||||||||||||||||||||||||||||||||||    
T  22416537 acatttaccaaacattattttttaatcatacaaacttataagctacaagttttatttttttaccttgccaaacaggccctaattctccaaaattatcata 22416438  T
Q  620 gtaagcgacaactccaa 636  Q
    |||||||||||||||||    
T  22416437 gtaagcgacaactccaa 22416421  T

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Target: chr6; HSP #3
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 440 - 513
Target Start/End: Original strand, 15131392 - 15131468
Alignment:
Q  440 tataagcttaaatgctatttgaaa---cgtctaaaaaataagatataagttggtgaaataaactataagctcgtgat 513  Q
    |||| |||||||||||| ||||||   ||||| ||||||||| |||||||| || ||||||  ||||||||||||||    
T  15131392 tatatgcttaaatgctacttgaaatagcgtctgaaaaataagctataagttagtaaaataagttataagctcgtgat 15131468  T

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Target: chr6; HSP #4
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 537 - 569
Target Start/End: Complemental strand, 5976602 - 5976570
Alignment:
Q  537 ttttttaatcatacaaacttataagctacaagt 569  Q
    |||||||||||||||||||||||||||| ||||    
T  5976602 ttttttaatcatacaaacttataagctataagt 5976570  T

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Target: chr3 (Bit Score: 33; Significance: 0.000000004; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 470 - 514
Target Start/End: Complemental strand, 25146421 - 25146377
Alignment:
Q  470 aaaaataagatataagttggtgaaataaactataagctcgtgata 514  Q
    ||||||||| ||||||||||||||||||  |||||||||||||||    
T  25146421 aaaaataagttataagttggtgaaataagttataagctcgtgata 25146377  T

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Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 472 - 508
Target Start/End: Original strand, 45693452 - 45693488
Alignment:
Q  472 aaataagatataagttggtgaaataaactataagctc 508  Q
    ||||||| |||||||| ||||||||||||||||||||    
T  45693452 aaataagctataagttcgtgaaataaactataagctc 45693488  T

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Target: chr2 (Bit Score: 32; Significance: 0.00000001; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 465 - 532
Target Start/End: Original strand, 32627657 - 32627724
Alignment:
Q  465 gtctaaaaaataagatataagttggtgaaataaactataagctcgtgataacatgacatttaccaaac 532  Q
    |||| |||||||||||||||| | |||||||||| |||||| ||||||| | || |||||||| ||||    
T  32627657 gtcttaaaaataagatataagctcgtgaaataaattataagttcgtgatgaaataacatttactaaac 32627724  T

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Target: chr2; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 535 - 568
Target Start/End: Original strand, 44984437 - 44984470
Alignment:
Q  535 tattttttaatcatacaaacttataagctacaag 568  Q
    |||||||||||||||||| |||||||||||||||    
T  44984437 tattttttaatcatacaagcttataagctacaag 44984470  T

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Target: chr5 (Bit Score: 31; Significance: 0.00000006; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 471 - 564
Target Start/End: Original strand, 27005885 - 27005979
Alignment:
Q  471 aaaataagatataagttggtgaaataaactataagctcgtgataacatgacatttaccaaacatta-ttttttaatcatacaaacttataagcta 564  Q
    |||||||| |||||| |  |||||||| ||||||| |||||||   ||| | |||||||||||| | ||||||||||| |||| |||||||||||    
T  27005885 aaaataagttataagctcttgaaataagctataagttcgtgatggaatgtcgtttaccaaacataatttttttaatcaaacaagcttataagcta 27005979  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 465 - 533
Target Start/End: Original strand, 8679156 - 8679224
Alignment:
Q  465 gtctaaaaaataagatataagttggtgaaataaactataagctcgtgataacatgacatttaccaaaca 533  Q
    |||||| ||||||| || ||| |  |||||||| ||||||||||||||||| | |||| ||||||||||    
T  8679156 gtctaagaaataagctacaagctactgaaataagctataagctcgtgataaaaagacaattaccaaaca 8679224  T

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Target: scaffold0004 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: scaffold0004
Description:

Target: scaffold0004; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 499 - 564
Target Start/End: Original strand, 339072 - 339137
Alignment:
Q  499 ctataagctcgtgataacatgacatttaccaaacattattttttaatcatacaaacttataagcta 564  Q
    |||||||||||||| || |||||| ||||||||  || || |||| |||||||| |||||||||||    
T  339072 ctataagctcgtgagaaaatgacagttaccaaatgtttttctttagtcatacaagcttataagcta 339137  T

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Target: chr1 (Bit Score: 30; Significance: 0.0000002; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 500 - 564
Target Start/End: Original strand, 21516721 - 21516786
Alignment:
Q  500 tataagctcgtgataacatgacatttaccaaacat-tattttttaatcatacaaacttataagcta 564  Q
    ||||||||||||| || |||||| ||||||||||| | ||||||| |||||| | |||||||||||    
T  21516721 tataagctcgtgaaaaaatgacaattaccaaacatgtcttttttagtcatacgagcttataagcta 21516786  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 440 - 511
Target Start/End: Original strand, 46056417 - 46056491
Alignment:
Q  440 tataagcttaaatgctatttgaaa---cgtctaaaaaataagatataagttggtgaaataaactataagctcgtg 511  Q
    ||||||||||||||||| ||||||   ||||| |||||||   |||||| | ||||||||||||||||| |||||    
T  46056417 tataagcttaaatgctacttgaaatagcgtctgaaaaatatcttataagctcgtgaaataaactataagttcgtg 46056491  T

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