View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17734_high_31 (Length: 251)
Name: NF17734_high_31
Description: NF17734
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17734_high_31 |
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Alignment Details
Target: chr4 (Bit Score: 223; Significance: 1e-123; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 223; E-Value: 1e-123
Query Start/End: Original strand, 8 - 234
Target Start/End: Complemental strand, 7909904 - 7909678
Alignment:
| Q |
8 |
cacttttctgttatataaaatcaaaaggcatcaccaatggtactaaattgttatatctcaaacgaaaacttcaaaatgttaaaataaggggaggagagtg |
107 |
Q |
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| T |
7909904 |
cacttttctgttatataaaatcaaaaggcatcaccaatggtactaaattgttatttctcaaacgaaaacttcaaaatgttaaaataaggggaggagagtg |
7909805 |
T |
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| Q |
108 |
gtcttagaaaattagagagggtgtgaatgacattttgacatatctcaagggaagttagtttaattttctcttaaacttaacatgaaataagcacgataaa |
207 |
Q |
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| T |
7909804 |
gtcttagaaaattagagagggtgtgaatgacattttgacatatctcaagggaagttagtttaattttctcttaaacttaacatgaaataagcacgataaa |
7909705 |
T |
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| Q |
208 |
gtccacaaacactatgtaaagaccaaa |
234 |
Q |
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| T |
7909704 |
gtccacaaacactatgtaaagaccaaa |
7909678 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 87 - 221
Target Start/End: Original strand, 7793050 - 7793184
Alignment:
| Q |
87 |
taaaataaggggaggagagtggtcttagaaaattagagagggtgtgaatgacattttgacatatctcaagggaagttagtttaattttctcttaaactta |
186 |
Q |
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| T |
7793050 |
taaaatgagggaaggagagtgctcttagaaaaccaaagggggtgtgagtgacattttaatatatctcaaaggaagttcgtgtaatttgcgcttaaactta |
7793149 |
T |
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| Q |
187 |
acatgaaataagcacgataaagtccacaaacacta |
221 |
Q |
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| T |
7793150 |
acatgatataagcacaatacagtccacaaacacta |
7793184 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 87 - 215
Target Start/End: Original strand, 7778340 - 7778468
Alignment:
| Q |
87 |
taaaataaggggaggagagtggtcttagaaaattagagagggtgtgaatgacattttgacatatctcaagggaagttagtttaattttctcttaaactta |
186 |
Q |
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| T |
7778340 |
taaaatgaggggaggagagtgctcttaggaaactaaagggagtgtgagtgacattttgacatatcttaaaggaagttagtgtaatttgtccttaaactta |
7778439 |
T |
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| Q |
187 |
acatgaaataagcacgataaagtccacaa |
215 |
Q |
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| T |
7778440 |
acatgatataagtgcaataaagtccacaa |
7778468 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 57 - 175
Target Start/End: Original strand, 8514260 - 8514378
Alignment:
| Q |
57 |
gttatatctcaaacgaaaacttcaaaatgttaaaataaggggaggagagtggtcttagaaaattagagagggtgtgaatgacattttgacatatctcaag |
156 |
Q |
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| T |
8514260 |
gttatttctcaaatggaaactttagaatgttaaaatgaggagagatgagtgtttttagaaaactaaagggggtgtgagcgacattttgacatatctcaag |
8514359 |
T |
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| Q |
157 |
ggaagttagtttaattttc |
175 |
Q |
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| T |
8514360 |
ggaggttagtgtaattttc |
8514378 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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