View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17734_high_33 (Length: 250)
Name: NF17734_high_33
Description: NF17734
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17734_high_33 |
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Alignment Details
Target: chr3 (Bit Score: 188; Significance: 1e-102; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 188; E-Value: 1e-102
Query Start/End: Original strand, 1 - 240
Target Start/End: Original strand, 248247 - 248484
Alignment:
| Q |
1 |
tcatttttaaagtactatcaatgacatgaaaagtaagaaagccaacacaagattgacaaatcactaaaactaaaaggggactnnnnnnnncccaagaaat |
100 |
Q |
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| T |
248247 |
tcatttttaaagtactatcaatgacatgaaaagtaagaaagccaacacaagattgacaaatcactaaaactaaaaggggactaaaaaaaacccaagaaat |
248346 |
T |
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| Q |
101 |
gtataataaggggactgaaataatggttttttgaaatgaattgactaaaatttcaattaagttaaaataaagggacaaaaagtgcatttgagcctaacat |
200 |
Q |
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| T |
248347 |
gtataataaggggactgaaataatggtttt-tgaaatgaattgactaaaatttcgattaatttaaaataaagggacaaaaagtgcatttgagcctaacat |
248445 |
T |
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| Q |
201 |
taaatttgacgtgatttttaatagtgtgtttggttctgtg |
240 |
Q |
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| T |
248446 |
taaatttgacgtgatttttaa-ggtgtgtttggttctgtg |
248484 |
T |
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Back To:
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Target: chr4 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 146 - 189
Target Start/End: Original strand, 22068886 - 22068929
Alignment:
| Q |
146 |
taaaatttcaattaagttaaaataaagggacaaaaagtgcattt |
189 |
Q |
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| T |
22068886 |
taaaatttcaattaagttaaaataaggggatcaaaagtgcattt |
22068929 |
T |
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