View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17734_high_38 (Length: 216)
Name: NF17734_high_38
Description: NF17734
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17734_high_38 |
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Alignment Details
Target: chr2 (Bit Score: 111; Significance: 3e-56; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 111; E-Value: 3e-56
Query Start/End: Original strand, 1 - 200
Target Start/End: Original strand, 43678793 - 43679004
Alignment:
| Q |
1 |
acgtctacaaactgtagtcctccaagtaaggatacaagcaactataaagtggccaagtcggtctagtgttccctcnnnnnnnnn-----------gaggt |
89 |
Q |
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| T |
43678793 |
acgtccacaaactgtagtcctccaagtagagatacaagcatctataaagtggccaagtcggtatagtgttccctcaaaaaagaaaaagaaaaaaagaggt |
43678892 |
T |
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| Q |
90 |
gggtatagtgttttttcattaaatgaatgtgggtttatatactagtaa-cattcaaggaatatgtgtacggcgtatgaacgggttattttcatacatact |
188 |
Q |
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| T |
43678893 |
gggtattgtgttttttcattaaatgaatgtgggtttatatactagtaaacattcaaggaatatgagtacggcgtatgaacgggttattttcatacatact |
43678992 |
T |
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| Q |
189 |
ttggtatgtatg |
200 |
Q |
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|||||||||||| |
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| T |
43678993 |
ttggtatgtatg |
43679004 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 1 - 47
Target Start/End: Original strand, 43698424 - 43698470
Alignment:
| Q |
1 |
acgtctacaaactgtagtcctccaagtaaggatacaagcaactataa |
47 |
Q |
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| T |
43698424 |
acgtctacaaactgtagtgctccaagtagagatacaagcaactataa |
43698470 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 85 - 121
Target Start/End: Original strand, 43698537 - 43698573
Alignment:
| Q |
85 |
gaggtgggtatagtgttttttcattaaatgaatgtgg |
121 |
Q |
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| T |
43698537 |
gaggtgggtatagtgttttttcattcaatgaatgtgg |
43698573 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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