View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17734_high_4 (Length: 508)

Name: NF17734_high_4
Description: NF17734
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17734_high_4
NF17734_high_4
[»] chr5 (25 HSPs)
chr5 (249-490)||(37435396-37435637)
chr5 (221-480)||(37382531-37382790)
chr5 (221-490)||(37393082-37393351)
chr5 (221-480)||(37823600-37823859)
chr5 (221-480)||(37702379-37702638)
chr5 (260-480)||(37532796-37533016)
chr5 (265-480)||(37401247-37401462)
chr5 (265-480)||(37593900-37594115)
chr5 (265-480)||(37639442-37639657)
chr5 (265-480)||(37696291-37696506)
chr5 (265-480)||(37711200-37711415)
chr5 (221-338)||(37428578-37428695)
chr5 (221-405)||(37639652-37639836)
chr5 (221-405)||(37401068-37401252)
chr5 (221-405)||(37711410-37711594)
chr5 (221-405)||(37594110-37594294)
chr5 (221-405)||(37696501-37696685)
chr5 (398-478)||(37413547-37413627)
chr5 (221-295)||(37413452-37413526)
chr5 (109-210)||(6273241-6273342)
chr5 (112-208)||(14351830-14351926)
chr5 (156-208)||(17644142-17644194)
chr5 (136-210)||(32383804-32383878)
chr5 (156-208)||(18942364-18942416)
chr5 (156-208)||(35456622-35456674)
[»] chr4 (10 HSPs)
chr4 (221-480)||(24217936-24218195)
chr4 (265-480)||(16843245-16843460)
chr4 (221-405)||(16843066-16843250)
chr4 (94-209)||(43245591-43245705)
chr4 (94-192)||(13428667-13428764)
chr4 (233-480)||(16845877-16846128)
chr4 (151-215)||(10006678-10006742)
chr4 (24-68)||(13428627-13428671)
chr4 (39-68)||(43245566-43245595)
chr4 (156-208)||(4414530-4414582)
[»] chr3 (4 HSPs)
chr3 (366-480)||(14553068-14553182)
chr3 (169-208)||(51537138-51537177)
chr3 (156-208)||(29727852-29727904)
chr3 (108-194)||(35054597-35054683)
[»] chr8 (4 HSPs)
chr8 (94-215)||(26403518-26403632)
chr8 (169-208)||(28761630-28761669)
chr8 (108-209)||(38712111-38712212)
chr8 (108-192)||(32493073-32493157)
[»] scaffold0712 (1 HSPs)
scaffold0712 (108-209)||(4816-4917)
[»] scaffold0709 (1 HSPs)
scaffold0709 (108-209)||(4836-4937)
[»] chr1 (6 HSPs)
chr1 (113-210)||(3794258-3794355)
chr1 (108-210)||(3014060-3014162)
chr1 (146-208)||(32364236-32364298)
chr1 (108-210)||(24638812-24638914)
chr1 (108-210)||(44410825-44410927)
chr1 (108-215)||(40960100-40960207)
[»] chr7 (6 HSPs)
chr7 (94-205)||(35331681-35331793)
chr7 (135-210)||(31813601-31813676)
chr7 (136-210)||(5419006-5419080)
chr7 (169-210)||(46170754-46170795)
chr7 (14-47)||(35331796-35331829)
chr7 (169-209)||(33610704-33610744)
[»] chr2 (5 HSPs)
chr2 (110-210)||(6065401-6065501)
chr2 (156-208)||(16106651-16106703)
chr2 (156-208)||(21800619-21800671)
chr2 (169-210)||(10810507-10810548)
chr2 (137-210)||(26606644-26606717)
[»] chr6 (1 HSPs)
chr6 (169-208)||(29419718-29419757)


Alignment Details
Target: chr5 (Bit Score: 114; Significance: 1e-57; HSPs: 25)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 114; E-Value: 1e-57
Query Start/End: Original strand, 249 - 490
Target Start/End: Complemental strand, 37435637 - 37435396
Alignment:
Q  249 acattgatctaagttccaacaagttgcaaggagatcttccaattccagctttaggcattgagaactttttactctctaacaacaacttcacaggaggcat 348  Q
    ||||||| || |||| |||||| |||||||||||  ||||||||||| |    ||||||||  ||||||| ||||| |||||||||||| |||||| |||    
T  37435637 acattgacctcagtttcaacaaattgcaaggagacattccaattccatccgatggcattgaatactttttgctctcaaacaacaacttcgcaggagacat 37435538  T
Q  349 ttcttcaacattgtgccatgcaagctcccttaatgtgctcaatttagctcacaacaaattaacaggcatgatcccacaatgcctgggaacatttccttct 448  Q
    |||||||| ||||||||| ||||||||| | || ||||||||||| || ||||||||||| |||||||| || ||| ||||||||||||||||||||| |    
T  37435537 ttcttcaaaattgtgccaagcaagctccatgaacgtgctcaatttggcccacaacaaattgacaggcataattccaaaatgcctgggaacatttcctttt 37435438  T
Q  449 ctttccattttggatatgcaaacgaacaaccttagtggaagc 490  Q
    |||||| ||||||||||||||| ||||||||||| |||||||    
T  37435437 ctttccgttttggatatgcaaatgaacaaccttaatggaagc 37435396  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 112; E-Value: 2e-56
Query Start/End: Original strand, 221 - 480
Target Start/End: Original strand, 37382531 - 37382790
Alignment:
Q  221 ctcttacacacatggaaggacatttggcacattgatctaagttccaacaagttgcaaggagatcttccaattccagctttaggcattgagaactttttac 320  Q
    |||||||||||||||| |||||||   ||  ||||||| |||| ||||||||||||||||||||||||||| |||  ||  |||||| |  |||||||||    
T  37382531 ctcttacacacatggagggacattcaacatgttgatctcagtttcaacaagttgcaaggagatcttccaatcccacgttatggcatttactactttttac 37382630  T
Q  321 tctctaacaacaacttcacaggaggcatttcttcaacattgtgccatgcaagctcccttaatgtgctcaatttagctcacaacaaattaacaggcatgat 420  Q
    |||| ||||||||||||||||||  ||||  ||   |||||||| | ||||| ||||| |||||||||||||| ||||||||||| ||||| ||||||||    
T  37382631 tctcgaacaacaacttcacaggaaacattgatttttcattgtgcaacgcaagttccctgaatgtgctcaatttggctcacaacaatttaactggcatgat 37382730  T
Q  421 cccacaatgcctgggaacatttccttctctttccattttggatatgcaaacgaacaacct 480  Q
     ||||||||| ||||||||||||||||||||||  | ||||||||||||| |||||||||    
T  37382731 tccacaatgcttgggaacatttccttctctttcggtattggatatgcaaatgaacaacct 37382790  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 110; E-Value: 3e-55
Query Start/End: Original strand, 221 - 490
Target Start/End: Original strand, 37393082 - 37393351
Alignment:
Q  221 ctcttacacacatggaaggacatttggcacattgatctaagttccaacaagttgcaaggagatcttccaattccagctttaggcattgagaactttttac 320  Q
    |||||| || ||||||||||||||   |||||||| || |||| ||||||||| ||||| ||||||||||||||| ||   ||||||||  |||||||||    
T  37393082 ctcttaaactcatggaaggacattatacacattgacctgagtttcaacaagttacaaggtgatcttccaattccacctgatggcattgaagactttttac 37393181  T
Q  321 tctctaacaacaacttcacaggaggcatttcttcaacattgtgccatgcaagctcccttaatgtgctcaatttagctcacaacaaattaacaggcatgat 420  Q
    |||| |||||||||||||||||||  |||||||||||||| ||| |||| || |||||| || | |||||||| ||||||||||| || ||||| |||||    
T  37393182 tctcaaacaacaacttcacaggagatatttcttcaacattctgcaatgctagttccctttatatcctcaatttggctcacaacaatttgacaggtatgat 37393281  T
Q  421 cccacaatgcctgggaacatttccttctctttccattttggatatgcaaacgaacaaccttagtggaagc 490  Q
     |||||||| || ||||||||| ||| ||| || |||||||||||||||| |||||||||  ||||||||    
T  37393282 tccacaatgtctaggaacattttcttatctctctattttggatatgcaaatgaacaacctctgtggaagc 37393351  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 96; E-Value: 7e-47
Query Start/End: Original strand, 221 - 480
Target Start/End: Complemental strand, 37823859 - 37823600
Alignment:
Q  221 ctcttacacacatggaaggacatttggcacattgatctaagttccaacaagttgcaaggagatcttccaattccagctttaggcattgagaactttttac 320  Q
    |||||| || |||||||||||||||||  | |||| || |||| ||||||||| ||||||||||||||||||||| |||  |||||| |  |||||| ||    
T  37823859 ctcttaaactcatggaaggacatttggtccgttgacctcagtttcaacaagttacaaggagatcttccaattccaccttctggcattcaatacttttcac 37823760  T
Q  321 tctctaacaacaacttcacaggaggcatttcttcaacattgtgccatgcaagctcccttaatgtgctcaatttagctcacaacaaattaacaggcatgat 420  Q
    |||| || |||||||||||||||  ||||||||||||||| ||| |||| || |||||| || ||||| |||| ||||||||||| || ||||| |||||    
T  37823759 tctcaaataacaacttcacaggatacatttcttcaacattctgcaatgccagttccctttatatgctcgatttggctcacaacaatttgacaggtatgat 37823660  T
Q  421 cccacaatgcctgggaacatttccttctctttccattttggatatgcaaacgaacaacct 480  Q
     ||||||||||||||||||||   |||||||    | ||||||||||||| |||||||||    
T  37823659 tccacaatgcctgggaacattaaattctcttcatgtattggatatgcaaatgaacaacct 37823600  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 92; E-Value: 2e-44
Query Start/End: Original strand, 221 - 480
Target Start/End: Complemental strand, 37702638 - 37702379
Alignment:
Q  221 ctcttacacacatggaaggacatttggcacattgatctaagttccaacaagttgcaaggagatcttccaattccagctttaggcattgagaactttttac 320  Q
    |||||| || ||||||||||||||   |||||| | || |||| ||| | |||||||||| |||||||||||||| ||   |||||||   |||||||||    
T  37702638 ctcttaaactcatggaaggacattatacacattaacctgagtttcaaaatgttgcaaggacatcttccaattccacctcatggcattgtacactttttac 37702539  T
Q  321 tctctaacaacaacttcacaggaggcatttcttcaacattgtgccatgcaagctcccttaatgtgctcaatttagctcacaacaaattaacaggcatgat 420  Q
    |||| ||||||||||||||||||   || ||||||||||| ||| ||||||| |||||| |  | |||||||| ||||||||||| || ||||| |||||    
T  37702538 tctcaaacaacaacttcacaggaaatatctcttcaacattctgcaatgcaagttccctttacattctcaatttggctcacaacaatttgacaggtatgat 37702439  T
Q  421 cccacaatgcctgggaacatttccttctctttccattttggatatgcaaacgaacaacct 480  Q
     |||||||| |||||||||||||||  ||| || |||||||||||||||| |||||||||    
T  37702438 tccacaatgtctgggaacatttcctcatctctctattttggatatgcaaatgaacaacct 37702379  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 89; E-Value: 1e-42
Query Start/End: Original strand, 260 - 480
Target Start/End: Complemental strand, 37533016 - 37532796
Alignment:
Q  260 agttccaacaagttgcaaggagatcttccaattccagctttaggcattgagaactttttactctctaacaacaacttcacaggaggcatttcttcaacat 359  Q
    |||| ||||||||| ||||||||||||||||||||| ||   |||||||   |||||| |||||| || ||||||||||||||||  |||||||||||||    
T  37533016 agtttcaacaagttacaaggagatcttccaattccacctgatggcattggatacttttcactctcaaataacaacttcacaggagatatttcttcaacat 37532917  T
Q  360 tgtgccatgcaagctcccttaatgtgctcaatttagctcacaacaaattaacaggcatgatcccacaatgcctgggaacatttccttctctttccatttt 459  Q
    | ||| ||||||| | ||| ||||| |||||||| ||||||||||| || ||||| ||||| ||||||||||||||||||||  ||||||||    | ||    
T  37532916 tctgcaatgcaagttacctgaatgttctcaatttggctcacaacaatttgacaggtatgattccacaatgcctgggaacattaacttctcttaatgtatt 37532817  T
Q  460 ggatatgcaaacgaacaacct 480  Q
    ||||||||||| |||||||||    
T  37532816 ggatatgcaaatgaacaacct 37532796  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 88; E-Value: 4e-42
Query Start/End: Original strand, 265 - 480
Target Start/End: Original strand, 37401247 - 37401462
Alignment:
Q  265 caacaagttgcaaggagatcttccaattccagctttaggcattgagaactttttactctctaacaacaacttcacaggaggcatttcttcaacattgtgc 364  Q
    |||||| || ||||||||||||||||||||| |||  |||||| |  |||||| |||||| || |||||||||||||||  ||||||||||||||| |||    
T  37401247 caacaactttcaaggagatcttccaattccaccttctggcattcaatacttttcactctcaaataacaacttcacaggatacatttcttcaacattctgc 37401346  T
Q  365 catgcaagctcccttaatgtgctcaatttagctcacaacaaattaacaggcatgatcccacaatgcctgggaacatttccttctctttccattttggata 464  Q
     |||| || |||||| |||||||| |||| ||||||||||| || ||||| ||||| ||||||||||||||||||||  ||||||||    | |||||||    
T  37401347 aatgccagttccctttatgtgctcgatttggctcacaacaatttgacaggtatgattccacaatgcctgggaacattaacttctcttaatgtattggata 37401446  T
Q  465 tgcaaacgaacaacct 480  Q
    |||||| |||||||||    
T  37401447 tgcaaatgaacaacct 37401462  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 88; E-Value: 4e-42
Query Start/End: Original strand, 265 - 480
Target Start/End: Complemental strand, 37594115 - 37593900
Alignment:
Q  265 caacaagttgcaaggagatcttccaattccagctttaggcattgagaactttttactctctaacaacaacttcacaggaggcatttcttcaacattgtgc 364  Q
    |||||| || ||||||||||||||||||||| ||   |||||| | |||| ||||||||| |||||||| ||||||||||  || ||||||||||| |||    
T  37594115 caacaactttcaaggagatcttccaattccacctgatggcattaaaaactatttactctcaaacaacaatttcacaggagatatatcttcaacattctgc 37594016  T
Q  365 catgcaagctcccttaatgtgctcaatttagctcacaacaaattaacaggcatgatcccacaatgcctgggaacatttccttctctttccattttggata 464  Q
     ||||||| | ||| ||||| |||||||| ||||||||||| |||||||| ||||| ||||||||||||||||||||  ||||||||    | |||||||    
T  37594015 aatgcaagttacctgaatgttctcaatttggctcacaacaatttaacaggtatgattccacaatgcctgggaacattaacttctcttaatgtattggata 37593916  T
Q  465 tgcaaacgaacaacct 480  Q
    |||||| |||||||||    
T  37593915 tgcaaatgaacaacct 37593900  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 88; E-Value: 4e-42
Query Start/End: Original strand, 265 - 480
Target Start/End: Complemental strand, 37639657 - 37639442
Alignment:
Q  265 caacaagttgcaaggagatcttccaattccagctttaggcattgagaactttttactctctaacaacaacttcacaggaggcatttcttcaacattgtgc 364  Q
    |||||| || ||||||||||||||||||||| |||  |||||| |  |||||| |||||| || |||||||||||||||  ||||||||||||||| |||    
T  37639657 caacaactttcaaggagatcttccaattccaccttctggcattaaatacttttcactctcaaataacaacttcacaggatacatttcttcaacattctgc 37639558  T
Q  365 catgcaagctcccttaatgtgctcaatttagctcacaacaaattaacaggcatgatcccacaatgcctgggaacatttccttctctttccattttggata 464  Q
     |||| || |||||| || ||||| |||| ||||||||||| || ||||| ||||| ||||||||||||||||||||  |||||||| |  | |||||||    
T  37639557 aatgccagttccctttatatgctcgatttggctcacaacaatttgacaggtatgattccacaatgcctgggaacattaacttctcttactgtattggata 37639458  T
Q  465 tgcaaacgaacaacct 480  Q
    |||||| |||||||||    
T  37639457 tgcaaatgaacaacct 37639442  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 88; E-Value: 4e-42
Query Start/End: Original strand, 265 - 480
Target Start/End: Complemental strand, 37696506 - 37696291
Alignment:
Q  265 caacaagttgcaaggagatcttccaattccagctttaggcattgagaactttttactctctaacaacaacttcacaggaggcatttcttcaacattgtgc 364  Q
    |||||| || ||||||||||||||||||||| ||   |||||| | |||| ||||||||| |||||||| ||||||||||  || ||||||||||| |||    
T  37696506 caacaattttcaaggagatcttccaattccacctgatggcattaaaaactatttactctcaaacaacaatttcacaggagatatatcttcaacattctgc 37696407  T
Q  365 catgcaagctcccttaatgtgctcaatttagctcacaacaaattaacaggcatgatcccacaatgcctgggaacatttccttctctttccattttggata 464  Q
     ||||||| | ||| ||||| |||||||| ||||||||||| |||||||| ||||| ||||||||||||||||||||  ||||||||    | |||||||    
T  37696406 aatgcaagttacctgaatgttctcaatttggctcacaacaatttaacaggtatgattccacaatgcctgggaacattaacttctcttaatgtattggata 37696307  T
Q  465 tgcaaacgaacaacct 480  Q
    |||||| |||||||||    
T  37696306 tgcaaatgaacaacct 37696291  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 84; E-Value: 1e-39
Query Start/End: Original strand, 265 - 480
Target Start/End: Complemental strand, 37711415 - 37711200
Alignment:
Q  265 caacaagttgcaaggagatcttccaattccagctttaggcattgagaactttttactctctaacaacaacttcacaggaggcatttcttcaacattgtgc 364  Q
    |||||| || ||||||||||||||||||||| |||  |||||| |  |||||| |||||| || |||||||||||||||  ||||||||||||||| |||    
T  37711415 caacaactttcaaggagatcttccaattccaccttctggcattcaatacttttcactctcaaataacaacttcacaggatacatttcttcaacattctgc 37711316  T
Q  365 catgcaagctcccttaatgtgctcaatttagctcacaacaaattaacaggcatgatcccacaatgcctgggaacatttccttctctttccattttggata 464  Q
     |||| || |||||| |||||||| |||| ||||||||||| || | ||| ||||| ||||||||||| ||||||||||||  ||| |   |||||||||    
T  37711315 aatgccagttccctttatgtgctcgatttggctcacaacaatttgaaaggtatgattccacaatgcctaggaacatttcctaatctctatgttttggata 37711216  T
Q  465 tgcaaacgaacaacct 480  Q
    |||||| |||||||||    
T  37711215 tgcaaatgaacaacct 37711200  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 221 - 338
Target Start/End: Complemental strand, 37428695 - 37428578
Alignment:
Q  221 ctcttacacacatggaaggacatttggcacattgatctaagttccaacaagttgcaaggagatcttccaattccagctttaggcattgagaactttttac 320  Q
    |||||| || |||||||| | ||||||||| ||||||| |||| ||||||||||||||||||||||||||||||| |||  ||||||||  |||||||||    
T  37428695 ctcttaaactcatggaagtatatttggcacgttgatctcagtttcaacaagttgcaaggagatcttccaattccaccttatggcattgaatactttttac 37428596  T
Q  321 tctctaacaacaacttca 338  Q
    ||||||||||||||||||    
T  37428595 tctctaacaacaacttca 37428578  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 69; E-Value: 1e-30
Query Start/End: Original strand, 221 - 405
Target Start/End: Complemental strand, 37639836 - 37639652
Alignment:
Q  221 ctcttacacacatggaaggacatttggcacattgatctaagttccaacaagttgcaaggagatcttccaattccagctttaggcattgagaactttttac 320  Q
    |||||| ||||||||||||||||| || |||||||||| |||| ||||| |||||||||| |||||||||||||| ||   |||||||   |||||||||    
T  37639836 ctcttaaacacatggaaggacattcggtacattgatcttagtttcaacatgttgcaaggacatcttccaattccacctgatggcattgtatactttttac 37639737  T
Q  321 tctctaacaacaacttcacaggaggcatttcttcaacattgtgccatgcaagctcccttaatgtgctcaatttagctcacaacaa 405  Q
    |||| || |||||||||||||||   ||||||||||||||  || | ||||| |||||| ||   |||||||| |||||||||||    
T  37639736 tctcaaataacaacttcacaggaaatatttcttcaacattccgcaacgcaagttccctttataccctcaatttggctcacaacaa 37639652  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 221 - 405
Target Start/End: Original strand, 37401068 - 37401252
Alignment:
Q  221 ctcttacacacatggaaggacatttggcacattgatctaagttccaacaagttgcaaggagatcttccaattccagctttaggcattgagaactttttac 320  Q
    |||||| || ||||||||||||||  | || | || || |||| ||||||||| ||||||||||||||||||||| |||  ||||||||  |||||| ||    
T  37401068 ctcttaaactcatggaaggacattcagtacttagacctcagtttcaacaagttacaaggagatcttccaattccaccttctggcattgaatacttttcac 37401167  T
Q  321 tctctaacaacaacttcacaggaggcatttcttcaacattgtgccatgcaagctcccttaatgtgctcaatttagctcacaacaa 405  Q
    |||| || |||||||||||||||  ||||||||||||||| ||| ||||||| ||||||  |   |||||||| |||||||||||    
T  37401168 tctcaaataacaacttcacaggatacatttcttcaacattctgcaatgcaagttcccttcgtaccctcaatttggctcacaacaa 37401252  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 221 - 405
Target Start/End: Complemental strand, 37711594 - 37711410
Alignment:
Q  221 ctcttacacacatggaaggacatttggcacattgatctaagttccaacaagttgcaaggagatcttccaattccagctttaggcattgagaactttttac 320  Q
    |||||| || |||||||||||||| || |||||||||| |||| ||||| ||||||||||||||||||||||||| | |  |||||| |  |||||| ||    
T  37711594 ctcttaaactcatggaaggacattcggtacattgatcttagtttcaacatgttgcaaggagatcttccaattccaccatctggcattcaatacttttcac 37711495  T
Q  321 tctctaacaacaacttcacaggaggcatttcttcaacattgtgccatgcaagctcccttaatgtgctcaatttagctcacaacaa 405  Q
    |||| || |||||||||||||||   ||||||||||||||  || | ||||| |||||| ||   |||||||| |||||||||||    
T  37711494 tctcaaataacaacttcacaggaaatatttcttcaacattccgcaacgcaagttccctttataccctcaatttggctcacaacaa 37711410  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 61; E-Value: 6e-26
Query Start/End: Original strand, 221 - 405
Target Start/End: Complemental strand, 37594294 - 37594110
Alignment:
Q  221 ctcttacacacatggaaggacatttggcacattgatctaagttccaacaagttgcaaggagatcttccaattccagctttaggcattgagaactttttac 320  Q
    |||||| || ||||||| || |||| | |||||||  | |||| ||||||||| ||||||||||||||||||||| |||  |||||| |  |||||| ||    
T  37594294 ctcttaaactcatggaatgagatttcgtacattgacttgagtttcaacaagttacaaggagatcttccaattccaccttctggcattcaatacttttcac 37594195  T
Q  321 tctctaacaacaacttcacaggaggcatttcttcaacattgtgccatgcaagctcccttaatgtgctcaatttagctcacaacaa 405  Q
    |||| || |||||||||||||||   |||||||||||||| ||| ||||||| |||||| ||   |||||||| |||||||||||    
T  37594194 tctcaaataacaacttcacaggaaatatttcttcaacattctgcaatgcaagttccctttataccctcaatttggctcacaacaa 37594110  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 61; E-Value: 6e-26
Query Start/End: Original strand, 221 - 405
Target Start/End: Complemental strand, 37696685 - 37696501
Alignment:
Q  221 ctcttacacacatggaaggacatttggcacattgatctaagttccaacaagttgcaaggagatcttccaattccagctttaggcattgagaactttttac 320  Q
    |||||| || ||||||||||||||  | || | || || |||| ||||||||| ||||||||||||||||||||| |||   ||||||   |||||| ||    
T  37696685 ctcttaaactcatggaaggacattcaggacttagacctcagtttcaacaagttacaaggagatcttccaattccaccttctagcattggatacttttcac 37696586  T
Q  321 tctctaacaacaacttcacaggaggcatttcttcaacattgtgccatgcaagctcccttaatgtgctcaatttagctcacaacaa 405  Q
    |||| ||||||||||||||||||   |||||||||||||| ||| ||||||| |||||| ||   |||||||| |||||||||||    
T  37696585 tctcaaacaacaacttcacaggaaatatttcttcaacattctgcaatgcaagttccctttataccctcaatttggctcacaacaa 37696501  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 398 - 478
Target Start/End: Original strand, 37413547 - 37413627
Alignment:
Q  398 cacaacaaattaacaggcatgatcccacaatgcctgggaacatttccttctctttccattttggatatgcaaacgaacaac 478  Q
    |||||||| |||||||||||||| ||||||||||| |||||||||||||||||||| || ||||||||||||| |||||||    
T  37413547 cacaacaatttaacaggcatgattccacaatgcctaggaacatttccttctctttctatattggatatgcaaatgaacaac 37413627  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 221 - 295
Target Start/End: Original strand, 37413452 - 37413526
Alignment:
Q  221 ctcttacacacatggaaggacatttggcacattgatctaagttccaacaagttgcaaggagatcttccaattcca 295  Q
    |||||||||||||||| ||| ||| | || || ||||| |||| |||||||||||||||||||||||||||||||    
T  37413452 ctcttacacacatggagggaaattcgacatatcgatctcagtttcaacaagttgcaaggagatcttccaattcca 37413526  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 109 - 210
Target Start/End: Complemental strand, 6273342 - 6273241
Alignment:
Q  109 tttagtttttaagtggtaaagtcattagttcaatcaaattttatttggttaaataccaacaaaaatttaatcttaagaccgagtcatccaaccgagttat 208  Q
    |||||||||||||||    |||||||  |||||||  |||| || ||||| |||||  | ||||||||||||||||| |||||||||| |||||||||||    
T  6273342 tttagtttttaagtgtctgagtcattcattcaatccgatttaatctggttcaatacatataaaaatttaatcttaaggccgagtcatctaaccgagttat 6273243  T
Q  209 tc 210  Q
    ||    
T  6273242 tc 6273241  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 112 - 208
Target Start/End: Original strand, 14351830 - 14351926
Alignment:
Q  112 agtttttaagtggtaaagtcattagttcaatcaaattttatttggttaaataccaacaaaaatttaatcttaagaccgagtcatccaaccgagttat 208  Q
    ||||||||||||||  ||||||| |||||| |  |||| ||  | ||||||||| | ||||||||||||||||||||| |||||  |||||||||||    
T  14351830 agtttttaagtggtcgagtcattggttcaaccctatttaataagattaaatacctataaaaatttaatcttaagaccgggtcatataaccgagttat 14351926  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #22
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 156 - 208
Target Start/End: Original strand, 17644142 - 17644194
Alignment:
Q  156 gttaaataccaacaaaaatttaatcttaagaccgagtcatccaaccgagttat 208  Q
    |||||||||| | ||| |||||||||||||||||||||||  |||||||||||    
T  17644142 gttaaatacctataaatatttaatcttaagaccgagtcatttaaccgagttat 17644194  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #23
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 136 - 210
Target Start/End: Original strand, 32383804 - 32383878
Alignment:
Q  136 gttcaatcaaattttatttggttaaataccaacaaaaatttaatcttaagaccgagtcatccaaccgagttattc 210  Q
    ||||||||  |||| || || ||||||||| | |||||||||||||| |||||| ||||||  ||||||||||||    
T  32383804 gttcaatctgatttaatctgattaaatacctataaaaatttaatcttgagaccgggtcatcttaccgagttattc 32383878  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #24
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 156 - 208
Target Start/End: Complemental strand, 18942416 - 18942364
Alignment:
Q  156 gttaaataccaacaaaaatttaatcttaagaccgagtcatccaaccgagttat 208  Q
    |||||||||| | ||| |||||||||||||||||||||||  ||| |||||||    
T  18942416 gttaaatacctataaatatttaatcttaagaccgagtcatttaactgagttat 18942364  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #25
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 156 - 208
Target Start/End: Complemental strand, 35456674 - 35456622
Alignment:
Q  156 gttaaataccaacaaaaatttaatcttaagaccgagtcatccaaccgagttat 208  Q
    |||||||||| | ||| |||||||||||||||| ||||||  |||||||||||    
T  35456674 gttaaatacctataaatatttaatcttaagaccaagtcatttaaccgagttat 35456622  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 92; Significance: 2e-44; HSPs: 10)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 92; E-Value: 2e-44
Query Start/End: Original strand, 221 - 480
Target Start/End: Original strand, 24217936 - 24218195
Alignment:
Q  221 ctcttacacacatggaaggacatttggcacattgatctaagttccaacaagttgcaaggagatcttccaattccagctttaggcattgagaactttttac 320  Q
    |||||||||||||||||||| ||| |    ||| |||| |||| |||||||||||||||||| ||||| |||||| | |  || ||| |  |||||| ||    
T  24217936 ctcttacacacatggaaggaaattcgaattattaatctcagtttcaacaagttgcaaggagaccttccgattccaccctatggaattcaatacttttcac 24218035  T
Q  321 tctctaacaacaacttcacaggaggcatttcttcaacattgtgccatgcaagctcccttaatgtgctcaatttagctcacaacaaattaacaggcatgat 420  Q
    |||| ||||||||||||||||||| |||| |||   || ||||| ||||||| ||||| ||| |||||||||| ||| ||||||| |||||||| | |||    
T  24218036 tctcaaacaacaacttcacaggagacattgctttgtcactgtgcaatgcaagttccctgaatttgctcaatttggctaacaacaatttaacaggaacgat 24218135  T
Q  421 cccacaatgcctgggaacatttccttctctttccattttggatatgcaaacgaacaacct 480  Q
     ||||||||||||||||||||||||| ||||||  | ||||||||||||| |||||||||    
T  24218136 tccacaatgcctgggaacatttccttatctttctgtattggatatgcaaatgaacaacct 24218195  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 80; E-Value: 3e-37
Query Start/End: Original strand, 265 - 480
Target Start/End: Original strand, 16843245 - 16843460
Alignment:
Q  265 caacaagttgcaaggagatcttccaattccagctttaggcattgagaactttttactctctaacaacaacttcacaggaggcatttcttcaacattgtgc 364  Q
    |||||| || ||||||||||||||||||||| ||   |||||||   |||||| |||||| || ||||||||||||||||  |||||||||||||| |||    
T  16843245 caacaattttcaaggagatcttccaattccacctgatggcattgtatacttttcactctcaaataacaacttcacaggagatatttcttcaacattctgc 16843344  T
Q  365 catgcaagctcccttaatgtgctcaatttagctcacaacaaattaacaggcatgatcccacaatgcctgggaacatttccttctctttccattttggata 464  Q
     |||||||  |||||||| |||| ||||| ||||||||||| || ||||| ||||| ||||||||||| ||||||||  ||||||||    | |||||||    
T  16843345 aatgcaagtacccttaatttgcttaatttggctcacaacaatttgacaggtatgattccacaatgcctaggaacattaacttctcttaatgtattggata 16843444  T
Q  465 tgcaaacgaacaacct 480  Q
    |||||| |||||||||    
T  16843445 tgcaaatgaacaacct 16843460  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 77; E-Value: 2e-35
Query Start/End: Original strand, 221 - 405
Target Start/End: Original strand, 16843066 - 16843250
Alignment:
Q  221 ctcttacacacatggaaggacatttggcacattgatctaagttccaacaagttgcaaggagatcttccaattccagctttaggcattgagaactttttac 320  Q
    |||||| |||||||||| ||||||||| |||||||||| |||| |||||| |||||||||||  ||||||||||| |||  ||| || |  ||||||  |    
T  16843066 ctcttaaacacatggaatgacatttggtacattgatcttagtttcaacaaattgcaaggagacattccaattccatcttatggccttcaatacttttcgc 16843165  T
Q  321 tctctaacaacaacttcacaggaggcatttcttcaacattgtgccatgcaagctcccttaatgtgctcaatttagctcacaacaa 405  Q
    |||| ||||||||||||||||||| ||||||||||||||| ||| ||||||| | | | ||||| |||||||| |||||||||||    
T  16843166 tctcaaacaacaacttcacaggagacatttcttcaacattctgcaatgcaagtttcttgaatgttctcaatttggctcacaacaa 16843250  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 64; E-Value: 9e-28
Query Start/End: Original strand, 94 - 209
Target Start/End: Original strand, 43245591 - 43245705
Alignment:
Q  94 atatacatattacattttagtttttaagtggtaaagtcattagttcaatcaaattttatttggttaaataccaacaaaaatttaatcttaagaccgagtc 193  Q
    ||||||||||| |||||||||||||||||| | | |||||||||||||| |||||| ||||||||||||||||| || |||||||| |||||||||||||    
T  43245591 atatacatattgcattttagtttttaagtgatga-gtcattagttcaattaaatttaatttggttaaataccaataacaatttaatattaagaccgagtc 43245689  T
Q  194 atccaaccgagttatt 209  Q
    ||   |||||||||||    
T  43245690 atatgaccgagttatt 43245705  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 63; E-Value: 4e-27
Query Start/End: Original strand, 94 - 192
Target Start/End: Original strand, 13428667 - 13428764
Alignment:
Q  94 atatacatattacattttagtttttaagtggtaaagtcattagttcaatcaaattttatttggttaaataccaacaaaaatttaatcttaagaccgagt 192  Q
    |||||||||||||||||||||||||||||| |  |||||||||||||||||||||| |||||||| |||| ||| ||||||||||| ||||||||||||    
T  13428667 atatacatattacattttagtttttaagtg-tcgagtcattagttcaatcaaatttaatttggttgaatatcaataaaaatttaatattaagaccgagt 13428764  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 233 - 480
Target Start/End: Original strand, 16845877 - 16846128
Alignment:
Q  233 tggaaggacatttggcacattgatctaagttccaacaagttgcaaggagatcttccaattccagctttaggcattgagaactttttactctctaacaaca 332  Q
    |||||||||||| | |||||||| || |||| |||||| |||||||||||  |||||||||||  ||  |||||| |  ||||||| ||||| |||||||    
T  16845877 tggaaggacattcgacacattgacctcagtttcaacaaattgcaaggagacattccaattccatattatggcattaaatactttttgctctcaaacaaca 16845976  T
Q  333 acttcacaggaggcatttcttcaacattgtgccatgcaagctcccttaatgtgctcaatttagctcacaacaaattaacaggcatg----atcccacaat 428  Q
    ||||||||| ||  || ||||| ||||| |||  |||||| | ||| | ||| |||||||| ||||||||||| |||| | | |||    || |||||||    
T  16845977 acttcacagaagatatgtcttccacattctgcagtgcaagtttcctgattgttctcaatttggctcacaacaatttaatatgtatgatatattccacaat 16846076  T
Q  429 gcctgggaacatttccttctctttccattttggatatgcaaacgaacaacct 480  Q
    || ||||||||||  ||||||||    | ||||||||||||| |||||||||    
T  16846077 gcttgggaacattaacttctcttaatgtattggatatgcaaatgaacaacct 16846128  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 151 - 215
Target Start/End: Original strand, 10006678 - 10006742
Alignment:
Q  151 atttggttaaataccaacaaaaatttaatcttaagaccgagtcatccaaccgagttattctattt 215  Q
    |||||||| |||||| | |||||||||||||||||||| | ||||| ||||||||||||| ||||    
T  10006678 atttggtttaatacctataaaaatttaatcttaagaccaattcatctaaccgagttattcgattt 10006742  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 24 - 68
Target Start/End: Original strand, 13428627 - 13428671
Alignment:
Q  24 cacactctttaaacaataatatatagctatacaaatattaatata 68  Q
    ||||||||||||||||| ||||||||||| |||||||||||||||    
T  13428627 cacactctttaaacaattatatatagctacacaaatattaatata 13428671  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 39 - 68
Target Start/End: Original strand, 43245566 - 43245595
Alignment:
Q  39 ataatatatagctatacaaatattaatata 68  Q
    ||||||||||||||||||||||||||||||    
T  43245566 ataatatatagctatacaaatattaatata 43245595  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 156 - 208
Target Start/End: Complemental strand, 4414582 - 4414530
Alignment:
Q  156 gttaaataccaacaaaaatttaatcttaagaccgagtcatccaaccgagttat 208  Q
    |||||||||| | ||| |||||||||||||||||||||||  || ||||||||    
T  4414582 gttaaatacctataaatatttaatcttaagaccgagtcatttaatcgagttat 4414530  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 59; Significance: 9e-25; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 59; E-Value: 9e-25
Query Start/End: Original strand, 366 - 480
Target Start/End: Complemental strand, 14553182 - 14553068
Alignment:
Q  366 atgcaagctcccttaatgtgctcaatttagctcacaacaaattaacaggcatgatcccacaatgcctgggaacatttccttctctttccattttggatat 465  Q
    ||||||| |||||| || |||||||||| ||||||||||| || ||||| ||||| |||||||||||||| |||||||||  ||| || |||||||||||    
T  14553182 atgcaagttccctttatatgctcaatttggctcacaacaatttgacaggtatgattccacaatgcctggggacatttcctcttctctctattttggatat 14553083  T
Q  466 gcaaacgaacaacct 480  Q
    ||||| |||||||||    
T  14553082 gcaaatgaacaacct 14553068  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 169 - 208
Target Start/End: Original strand, 51537138 - 51537177
Alignment:
Q  169 aaaaatttaatcttaagaccgagtcatccaaccgagttat 208  Q
    |||||||||||||||||||||||||||| |||||||||||    
T  51537138 aaaaatttaatcttaagaccgagtcatctaaccgagttat 51537177  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 156 - 208
Target Start/End: Complemental strand, 29727904 - 29727852
Alignment:
Q  156 gttaaataccaacaaaaatttaatcttaagaccgagtcatccaaccgagttat 208  Q
    |||||||| | | |||||||||||||||||||||||||||| ||| |||||||    
T  29727904 gttaaatagctataaaaatttaatcttaagaccgagtcatctaactgagttat 29727852  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 108 - 194
Target Start/End: Original strand, 35054597 - 35054683
Alignment:
Q  108 ttttagtttttaagtggtaaagtcattagttcaatcaaattttatttggttaaataccaacaaaaatttaatcttaagaccgagtca 194  Q
    |||||||||||||||||    |||||  |||||||| ||||| || | |||||||||  | |||||||||||| |||||||||||||    
T  35054597 ttttagtttttaagtggccgggtcatcggttcaatccaatttaatctagttaaatacatataaaaatttaatcgtaagaccgagtca 35054683  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 56; Significance: 5e-23; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 94 - 215
Target Start/End: Original strand, 26403518 - 26403632
Alignment:
Q  94 atatacatattacattttagtttttaagtggtaaagtcattagttcaatcaaattttatttggttaaataccaacaaaaatttaatcttaagaccgagtc 193  Q
    ||||||||||||||||||||||||||||||||  ||||||||||| | ||||||||       ||||||||||| ||||||| ||||||| |||| ||||    
T  26403518 atatacatattacattttagtttttaagtggtcgagtcattagttgactcaaattt-------ttaaataccaataaaaattgaatcttacgaccaagtc 26403610  T
Q  194 atccaaccgagttattctattt 215  Q
    |||  |||||||||||||||||    
T  26403611 atctgaccgagttattctattt 26403632  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 169 - 208
Target Start/End: Original strand, 28761630 - 28761669
Alignment:
Q  169 aaaaatttaatcttaagaccgagtcatccaaccgagttat 208  Q
    |||||||||||||||||||||||||| | |||||||||||    
T  28761630 aaaaatttaatcttaagaccgagtcacctaaccgagttat 28761669  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 108 - 209
Target Start/End: Original strand, 38712111 - 38712212
Alignment:
Q  108 ttttagtttttaagtggtaaagtcattagttcaatcaaattttatttggttaaataccaacaaaaatttaatcttaagaccgagtcatccaaccgagtta 207  Q
    |||||||||||||||||   ||||||  ||||||||  |||| || | |||||||||  | |||||||||||| ||||||||| ||| |  |||||||||    
T  38712111 ttttagtttttaagtggccgagtcatcggttcaatccgatttaatctagttaaatacatataaaaatttaatcgtaagaccgaatcaacttaccgagtta 38712210  T
Q  208 tt 209  Q
    ||    
T  38712211 tt 38712212  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 108 - 192
Target Start/End: Original strand, 32493073 - 32493157
Alignment:
Q  108 ttttagtttttaagtggtaaagtcattagttcaatcaaattttatttggttaaataccaacaaaaatttaatcttaagaccgagt 192  Q
    |||||||||||||||||   ||||||  ||||||||  |||| || | |||||||||  | |||||||||||| |||||||||||    
T  32493073 ttttagtttttaagtggccgagtcatgggttcaatccgatttaatctagttaaatacacataaaaatttaatcgtaagaccgagt 32493157  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0712 (Bit Score: 46; Significance: 5e-17; HSPs: 1)
Name: scaffold0712
Description:

Target: scaffold0712; HSP #1
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 108 - 209
Target Start/End: Original strand, 4816 - 4917
Alignment:
Q  108 ttttagtttttaagtggtaaagtcattagttcaatcaaattttatttggttaaataccaacaaaaatttaatcttaagaccgagtcatccaaccgagtta 207  Q
    |||||||||||||||||   |||||| |||||||||  |||| || |||||||||||| | |||||||||||||||||||||  ||||| ||| ||||||    
T  4816 ttttagtttttaagtggctgagtcatcagttcaatccgatttaatctggttaaatacctataaaaatttaatcttaagaccggatcatctaactgagtta 4915  T
Q  208 tt 209  Q
    ||    
T  4916 tt 4917  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0709 (Bit Score: 46; Significance: 5e-17; HSPs: 1)
Name: scaffold0709
Description:

Target: scaffold0709; HSP #1
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 108 - 209
Target Start/End: Original strand, 4836 - 4937
Alignment:
Q  108 ttttagtttttaagtggtaaagtcattagttcaatcaaattttatttggttaaataccaacaaaaatttaatcttaagaccgagtcatccaaccgagtta 207  Q
    |||||||||||||||||   |||||| |||||||||  |||| || |||||||||||| | |||||||||||||||||||||  ||||| ||| ||||||    
T  4836 ttttagtttttaagtggctgagtcatcagttcaatccgatttaatctggttaaatacctataaaaatttaatcttaagaccggatcatctaactgagtta 4935  T
Q  208 tt 209  Q
    ||    
T  4936 tt 4937  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 6)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 113 - 210
Target Start/End: Complemental strand, 3794355 - 3794258
Alignment:
Q  113 gtttttaagtggtaaagtcattagttcaatcaaattttatttggttaaataccaacaaaaatttaatcttaagaccgagtcatccaaccgagttattc 210  Q
    |||||||||| ||  |||||| |||||||||  |||| || || ||||||||| | |||||||||||||||||| || |||||| |||||||||||||    
T  3794355 gtttttaagtagtcgagtcatcagttcaatccgatttaatatgattaaatacctataaaaatttaatcttaagatcgggtcatctaaccgagttattc 3794258  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 108 - 210
Target Start/End: Original strand, 3014060 - 3014162
Alignment:
Q  108 ttttagtttttaagtggtaaagtcattagttcaatcaaattttatttggttaaataccaacaaaaatttaatcttaagaccgagtcatccaaccgagtta 207  Q
    ||||||||||||||| ||  |||||   ||||||||  |||| || | |||||||||| | ||||||||||||||||||||| |||||  ||||||||||    
T  3014060 ttttagtttttaagtagtcgagtcacgggttcaatccgatttaatatagttaaatacctataaaaatttaatcttaagaccgggtcatttaaccgagtta 3014159  T
Q  208 ttc 210  Q
    |||    
T  3014160 ttc 3014162  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 146 - 208
Target Start/End: Complemental strand, 32364298 - 32364236
Alignment:
Q  146 attttatttggttaaataccaacaaaaatttaatcttaagaccgagtcatccaaccgagttat 208  Q
    |||| |||||||||||||   | |||||||||||||||||||||||||||| |||||||||||    
T  32364298 atttaatttggttaaatagttataaaaatttaatcttaagaccgagtcatctaaccgagttat 32364236  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 108 - 210
Target Start/End: Complemental strand, 24638914 - 24638812
Alignment:
Q  108 ttttagtttttaagtggtaaagtcattagttcaatcaaattttatttggttaaataccaacaaaaatttaatcttaagaccgagtcatccaaccgagtta 207  Q
    |||||||||||||||||   ||||||  ||||||||  |||| || | |||||||||  | |||||||||||| ||||||||||||| |  |||||||||    
T  24638914 ttttagtttttaagtggccgagtcatcggttcaatcctatttaatctagttaaatacatataaaaatttaatcgtaagaccgagtcaacttaccgagtta 24638815  T
Q  208 ttc 210  Q
    |||    
T  24638814 ttc 24638812  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 108 - 210
Target Start/End: Complemental strand, 44410927 - 44410825
Alignment:
Q  108 ttttagtttttaagtggtaaagtcattagttcaatcaaattttatttggttaaataccaacaaaaatttaatcttaagaccgagtcatccaaccgagtta 207  Q
    |||| ||||||||||||   ||||||| ||||||||  |||| ||  |||||| |||| | ||| |||||||||||| ||||||||||| | ||||||||    
T  44410927 tttttgtttttaagtggccgagtcattggttcaatccgatttaatcgggttaattacctataaagatttaatcttaaaaccgagtcatctagccgagtta 44410828  T
Q  208 ttc 210  Q
    |||    
T  44410827 ttc 44410825  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 108 - 215
Target Start/End: Original strand, 40960100 - 40960207
Alignment:
Q  108 ttttagtttttaagtggtaaagtcattagttcaatcaaattttatttggttaaataccaacaaaaatttaatcttaagaccgagtcatccaaccgagtta 207  Q
    |||||||||||||||  | |||||||  ||||||||  || | |  |||||||||||| | ||||| |||||||||||| || |||||  ||||||||||    
T  40960100 ttttagtttttaagtaatcaagtcatcggttcaatccgatctaacctggttaaatacctataaaaaattaatcttaagatcgggtcatgtaaccgagtta 40960199  T
Q  208 ttctattt 215  Q
    ||| ||||    
T  40960200 ttcaattt 40960207  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 41; Significance: 0.00000000000005; HSPs: 6)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 94 - 205
Target Start/End: Complemental strand, 35331793 - 35331681
Alignment:
Q  94 atatacatattacattttagtttttaagtggtaaagt-cattagttcaatcaaattttatttggttaaataccaacaaaaatttaatcttaagaccgagt 192  Q
    ||||||||||||||||||||||| ||||||   | |  ||||| ||||||||||||| ||||||||||||   || ||||||||||||||||||  ||||    
T  35331793 atatacatattacattttagtttctaagtgtcgacggacattaattcaatcaaatttaatttggttaaatcttaataaaaatttaatcttaagatggagt 35331694  T
Q  193 catccaaccgagt 205  Q
    |||  ||||||||    
T  35331693 catttaaccgagt 35331681  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 135 - 210
Target Start/End: Complemental strand, 31813676 - 31813601
Alignment:
Q  135 agttcaatcaaattttatttggttaaataccaacaaaaatttaatcttaagaccgagtcatccaaccgagttattc 210  Q
    ||||||||| ||||| || |||||||||||| | |||||||||| ||||||||||  ||||| |||||||||||||    
T  31813676 agttcaatccaatttaatatggttaaatacctataaaaatttaaccttaagaccggatcatctaaccgagttattc 31813601  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 136 - 210
Target Start/End: Complemental strand, 5419080 - 5419006
Alignment:
Q  136 gttcaatcaaattttatttggttaaataccaacaaaaatttaatcttaagaccgagtcatccaaccgagttattc 210  Q
    |||||||| ||| | || |||||||||||| | ||||||||||||||||||| | ||||| ||||||||||||||    
T  5419080 gttcaatccaatctaatctggttaaatacctataaaaatttaatcttaagacagggtcatacaaccgagttattc 5419006  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 169 - 210
Target Start/End: Complemental strand, 46170795 - 46170754
Alignment:
Q  169 aaaaatttaatcttaagaccgagtcatccaaccgagttattc 210  Q
    ||||||||||||||||| |||||||||| |||||||||||||    
T  46170795 aaaaatttaatcttaaggccgagtcatctaaccgagttattc 46170754  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 14 - 47
Target Start/End: Complemental strand, 35331829 - 35331796
Alignment:
Q  14 aaaatatagtcacactctttaaacaataatatat 47  Q
    ||||||||| ||||||||||||||||||||||||    
T  35331829 aaaatatagccacactctttaaacaataatatat 35331796  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 169 - 209
Target Start/End: Complemental strand, 33610744 - 33610704
Alignment:
Q  169 aaaaatttaatcttaagaccgagtcatccaaccgagttatt 209  Q
    |||||||||||||||| | ||||||||| ||||||||||||    
T  33610744 aaaaatttaatcttaaaaacgagtcatctaaccgagttatt 33610704  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 33; Significance: 0.000000003; HSPs: 5)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 110 - 210
Target Start/End: Original strand, 6065401 - 6065501
Alignment:
Q  110 ttagtttttaagtggtaaagtcattagttcaatcaaattttatttggttaaataccaacaaaaatttaatcttaagaccgagtcatccaaccgagttatt 209  Q
    |||||||||||||||   ||||||  ||||||||  |||| || || ||||||||| | ||||| ||| ||||||| || ||||||| ||||||||||||    
T  6065401 ttagtttttaagtggccgagtcatcggttcaatccgatttaatctgattaaatacctataaaaaattattcttaaggccaagtcatcaaaccgagttatt 6065500  T
Q  210 c 210  Q
    |    
T  6065501 c 6065501  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 156 - 208
Target Start/End: Original strand, 16106651 - 16106703
Alignment:
Q  156 gttaaataccaacaaaaatttaatcttaagaccgagtcatccaaccgagttat 208  Q
    |||||||| | | |||||||||||||||||| ||||||||| |||||||||||    
T  16106651 gttaaatagctataaaaatttaatcttaagatcgagtcatctaaccgagttat 16106703  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 156 - 208
Target Start/End: Original strand, 21800619 - 21800671
Alignment:
Q  156 gttaaataccaacaaaaatttaatcttaagaccgagtcatccaaccgagttat 208  Q
    |||||||||| | ||| |||||||||||||||||||||||  |||||||||||    
T  21800619 gttaaatacctataaatatttaatcttaagaccgagtcatttaaccgagttat 21800671  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 169 - 210
Target Start/End: Original strand, 10810507 - 10810548
Alignment:
Q  169 aaaaatttaatcttaagaccgagtcatccaaccgagttattc 210  Q
    ||||||||||||||| ||||| ||||| ||||||||||||||    
T  10810507 aaaaatttaatcttacgaccgggtcatacaaccgagttattc 10810548  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 137 - 210
Target Start/End: Complemental strand, 26606717 - 26606644
Alignment:
Q  137 ttcaatcaaattttatttggttaaataccaacaaaaatttaatcttaagaccgagtcatccaaccgagttattc 210  Q
    ||||||| ||| | || ||||| |||||| | ||||||||||||||||||  | |||||| |||||||||||||    
T  26606717 ttcaatccaatctaatctggttcaatacctataaaaatttaatcttaagattgggtcatctaaccgagttattc 26606644  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 169 - 208
Target Start/End: Original strand, 29419718 - 29419757
Alignment:
Q  169 aaaaatttaatcttaagaccgagtcatccaaccgagttat 208  Q
    |||||||||||||||||||||||||| | |||||||||||    
T  29419718 aaaaatttaatcttaagaccgagtcacctaaccgagttat 29419757  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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