View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF17734_high_7 (Length: 438)
Name: NF17734_high_7
Description: NF17734
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17734_high_7 |
 | |
|
| [»] scaffold0027 (1 HSPs) |
| | |
|
Alignment Details
Target: chr7 (Bit Score: 222; Significance: 1e-122; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 222; E-Value: 1e-122
Query Start/End: Original strand, 1 - 284
Target Start/End: Complemental strand, 6842408 - 6842128
Alignment:
| Q |
1 |
tcatcatgaatattccttataaattgtggttgagttatatattaactttgagggacctcgtccacaccttaaacctagtagaaattgttccctcatcatt |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||| ||||||||| |||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
|
|
| T |
6842408 |
tcatcatgaatattccttataaattgtggt-gagttatat--taactttgagggacctcgtccacaccttccacctagtagaaattgttccctcatcatt |
6842312 |
T |
|
| Q |
101 |
aagggtgcaaatatatggttaactgaactatattgacaaactaaactgcactgaatcaaaaataacagtaaccttttatatggtttatgaattgaaccac |
200 |
Q |
| |
|
||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
|
|
| T |
6842311 |
aagtgtgcaaatatatggttaactgaactatattgacaaactaaactgcactgaatcaaaaataactgtaaccttttatatggtttatgaattgaaccac |
6842212 |
T |
|
| Q |
201 |
atatttaaaaaaatatcagttaaccaaacttaaacnnnnnnnnncaaacaaacggattgaactgtttttgaattatttgtatgg |
284 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
6842211 |
atatttaaaaaaatatcagttaaccaaacttaaacaaaaaaaaacaaacaaacggattgaactgtttttgaattatttgtatgg |
6842128 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 402 - 438
Target Start/End: Complemental strand, 6842011 - 6841975
Alignment:
| Q |
402 |
tatcaaagtgaattgaatacgtaggagttggagaatg |
438 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| |
|
|
| T |
6842011 |
tatcaaagtgaattgaatacgtaggagttggagaatg |
6841975 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 43; Significance: 0.000000000000003; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 105 - 235
Target Start/End: Complemental strand, 26065101 - 26064972
Alignment:
| Q |
105 |
gtgcaaatatatggttaactgaactatattgacaaactaaactgcactgaatcaaaaataacagtaaccttttatatggtttatgaattgaaccacatat |
204 |
Q |
| |
|
|||||||||||||| ||| ||||| |||| || | || |||| |||| ||||||||| || |||||| |||||||||| ||||| |||||||||||| |
|
|
| T |
26065101 |
gtgcaaatatatggataattgaaccatatggatgatctgaactacactaaatcaaaaagaattgtaaccacttatatggttcatgaactgaaccacatat |
26065002 |
T |
|
| Q |
205 |
ttaaaaaaatatcagttaaccaaacttaaac |
235 |
Q |
| |
|
| ||||||| ||||||||||| |||| |||| |
|
|
| T |
26065001 |
tcaaaaaaa-atcagttaaccgaactgaaac |
26064972 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0027 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: scaffold0027
Description:
Target: scaffold0027; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 159 - 235
Target Start/End: Original strand, 118464 - 118539
Alignment:
| Q |
159 |
aaaataacagtaaccttttatatggtttatgaattgaaccacatatttaaaaaaatatcagttaaccaaacttaaac |
235 |
Q |
| |
|
|||| ||| |||||| ||| |||||| || || |||||||||||||||||||| | |||||||||||||||||||| |
|
|
| T |
118464 |
aaaaaaactgtaaccaattaaatggttcataaactgaaccacatatttaaaaaagt-tcagttaaccaaacttaaac |
118539 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 180 - 235
Target Start/End: Original strand, 3427169 - 3427223
Alignment:
| Q |
180 |
atggtttatgaattgaaccacatatttaaaaaaatatcagttaaccaaacttaaac |
235 |
Q |
| |
|
|||||| ||||| |||||||||||||||||||| | ||| |||||||||||||||| |
|
|
| T |
3427169 |
atggttcatgaactgaaccacatatttaaaaaagt-tcaattaaccaaacttaaac |
3427223 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University