View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17734_high_8 (Length: 431)
Name: NF17734_high_8
Description: NF17734
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17734_high_8 |
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| [»] scaffold0578 (1 HSPs) |
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Alignment Details
Target: scaffold0578 (Bit Score: 387; Significance: 0; HSPs: 1)
Name: scaffold0578
Description:
Target: scaffold0578; HSP #1
Raw Score: 387; E-Value: 0
Query Start/End: Original strand, 17 - 415
Target Start/End: Original strand, 1606 - 2004
Alignment:
| Q |
17 |
aaaattaaattagccttctttgtatagcaattggacatagaaaatactgtaaaatctaatgctcgattcagggagcaaatctaaaggggggaccatccgg |
116 |
Q |
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|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
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| T |
1606 |
aaaattcaattagccttctttgtatagcaattggacatagaaaatactgtaaaatctaatgctcgattcagggagcaaatctaaaagggggaccatccgg |
1705 |
T |
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| Q |
117 |
gggaaaaatgatcaatcatcaattttatcatacacaatctattaaggaacaaacagacagaaagaacctctttctcttctctatcttactcttcaggtgt |
216 |
Q |
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| T |
1706 |
gggaaaaatgatcaatcatcaattttatcatacacaatctattaaggaacaaacaaacagaaagaacctctttctcttctctatcttactcttcaggtgt |
1805 |
T |
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| Q |
217 |
atagatcggcgattcaacatctgaagtaaagttgtgaactggttcagaaagcacgcggagtaaggaaggcccttcaggcagtgacaaggctgaagaagtt |
316 |
Q |
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| T |
1806 |
atagatcggcgattcaacatctgaagtaaagttgtgaactggttcagaaagcacgcggagtaaggaaggcccttcaggcagtgacaaggctgaagaagtt |
1905 |
T |
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| Q |
317 |
gctgattccagtgacaaatctgaagctggtgccgattcctccatcgtcaaattctgcaatccaggtttcaattcttcattacaaaatctctcatattca |
415 |
Q |
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| T |
1906 |
gctgattccagtgacaaatctgaagctggtgccgattcctccatcgtcaaattctgcaatccaggtttcaattcttcattacaaaatctctcatattca |
2004 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 387; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 387; E-Value: 0
Query Start/End: Original strand, 17 - 415
Target Start/End: Original strand, 4955614 - 4956012
Alignment:
| Q |
17 |
aaaattaaattagccttctttgtatagcaattggacatagaaaatactgtaaaatctaatgctcgattcagggagcaaatctaaaggggggaccatccgg |
116 |
Q |
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|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
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| T |
4955614 |
aaaattcaattagccttctttgtatagcaattggacatagaaaatactgtaaaatctaatgctcgattcagggagcaaatctaaaagggggaccatccgg |
4955713 |
T |
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| Q |
117 |
gggaaaaatgatcaatcatcaattttatcatacacaatctattaaggaacaaacagacagaaagaacctctttctcttctctatcttactcttcaggtgt |
216 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4955714 |
gggaaaaatgatcaatcatcaattttatcatacacaatctattaaggaacaaacaaacagaaagaacctctttctcttctctatcttactcttcaggtgt |
4955813 |
T |
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| Q |
217 |
atagatcggcgattcaacatctgaagtaaagttgtgaactggttcagaaagcacgcggagtaaggaaggcccttcaggcagtgacaaggctgaagaagtt |
316 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4955814 |
atagatcggcgattcaacatctgaagtaaagttgtgaactggttcagaaagcacgcggagtaaggaaggcccttcaggcagtgacaaggctgaagaagtt |
4955913 |
T |
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| Q |
317 |
gctgattccagtgacaaatctgaagctggtgccgattcctccatcgtcaaattctgcaatccaggtttcaattcttcattacaaaatctctcatattca |
415 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4955914 |
gctgattccagtgacaaatctgaagctggtgccgattcctccatcgtcaaattctgcaatccaggtttcaattcttcattacaaaatctctcatattca |
4956012 |
T |
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