View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17734_low_1 (Length: 736)

Name: NF17734_low_1
Description: NF17734
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17734_low_1
NF17734_low_1
[»] chr4 (1 HSPs)
chr4 (14-736)||(42444976-42445698)


Alignment Details
Target: chr4 (Bit Score: 715; Significance: 0; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 715; E-Value: 0
Query Start/End: Original strand, 14 - 736
Target Start/End: Complemental strand, 42445698 - 42444976
Alignment:
Q  14 acatcatctgagagactgaaaccattgagttcatcattcatgagaatcatggcggcaccacctgctctttgtacttcctgtcctttggcaattcttccta 113  Q
    |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  42445698 acatcagctgagagactgaaaccattgagttcatcattcatgagaatcatggcggcaccacctgctctttgtacttcctgtcctttggcaattcttccta 42445599  T
Q  114 taccccctcccctctcacacaaaacaacctttcctctgaagtcaatgtcactcaaggatccattagcacaaaatgaagattctactttgccatttattcc 213  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  42445598 taccccctcccctctcacacaaaacaacctttcctctgaagtcaatgtcactcaaggatccattagcacaaaatgaagattctactttgccatttattcc 42445499  T
Q  214 tgcatatgctaagggcaacagtgttggagagaaatcggaaggctggaaaacagattcgccctcaaattcttccccatttccaagcactgctgttgccaca 313  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  42445498 tgcatatgctaagggcaacagtgttggagagaaatcggaaggctggaaaacagattcgccctcaaattcttccccatttccaagcactgctgttgccaca 42445399  T
Q  314 atggttctgtcaatagtgcttgctccaactgtgagcatccatggggctccattaaccaaggaggcatcagaaggaccaaagtttcctgctgcaatactta 413  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  42445398 atggttctgtcaatagtgcttgctccaactgtgagcatccatggggctccattaaccaaggaggcatcagaaggaccaaagtttcctgctgcaatactta 42445299  T
Q  414 caaagattcccttctgaattgctgcaaaagcgcctatggcagtgctatcattgaaaaatggaggaggctcacttagaccaagtgatatcgatattacatc 513  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  42445298 caaagattcccttctgaattgctgcaaaagcgcctatggcagtgctatcattgaaaaatggaggaggctcacttagaccaagtgatatcgatattacatc 42445199  T
Q  514 cacaccatcctccacagctgcatctaatgccgcaagtatattactctcggcacagtcttctccaaagcacactttgtaaattgctaggtgagcatgagga 613  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  42445198 cacaccatcctccacagctgcatctaatgccgcaagtatattactctcggcacagtcttctccaaagcacactttgtaaattgctaggtgagcatgagga 42445099  T
Q  614 gccatccctgctgccgtacctttagcatttcctagcacttctgcattgtcgacaaaagcaccagccgctgtacttgctgtgtgagtcccgtgtccatcct 713  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  42445098 gccatccctgctgccgtacctttagcatttcctagcacttctgcattttcgacaaaagcaccagccgctgtacttgctgtgtgagtcccgtgtccatcct 42444999  T
Q  714 catcaattggtgcttcagctttc 736  Q
    |||||||||||||||||||||||    
T  42444998 catcaattggtgcttcagctttc 42444976  T

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