View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17734_low_10 (Length: 441)
Name: NF17734_low_10
Description: NF17734
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17734_low_10 |
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| [»] chr1 (3 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 180; Significance: 5e-97; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 180; E-Value: 5e-97
Query Start/End: Original strand, 147 - 441
Target Start/End: Original strand, 52872303 - 52872579
Alignment:
| Q |
147 |
tactttaattattttactcctggacgatgatacttttagattattatattgtctcaaaaaa-ttgtaacatgaaaaaagttattgtactctattctttca |
245 |
Q |
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| T |
52872303 |
tactttaattattttactcctggaagat-atacttttagattattattttgtctcaaaaaaattgtaacatgaaaaaagttattgtactctattctttca |
52872401 |
T |
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| Q |
246 |
ataaaattttaattaccaataaaattgcacaaatgattggaaatttattttactcaannnnnnnaattagtaaaatttaaattacccgtgcatctcaagg |
345 |
Q |
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| T |
52872402 |
ataaaat------------------tgcacaaatgattggaaatttattttactcaatttttttaattagtaaaatttaaatcacccgtgcatctcaagg |
52872483 |
T |
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| Q |
346 |
tctatggtctcgtagaaatagaatagaatccaataatgaacgtgaggttgtatgttggagccacaaatttggcgttgatgcgatgagagggagcaa |
441 |
Q |
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| T |
52872484 |
tccatggtctcgtagaaatagaatagaattcaataatgaacgtgaggttgtatgttggagccacaaatttggcgttgatgcgatgagagggagcaa |
52872579 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 1 - 121
Target Start/End: Original strand, 52872107 - 52872223
Alignment:
| Q |
1 |
atataaatacatatatttttgaacgatgccaacaattaatatagcatttttactgataaatttatttaatggtataatcgaaagtgataaagtcggttca |
100 |
Q |
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| T |
52872107 |
atataaatacatatatttttgaacgatgccaacaat----atagcatttttacggataaatttatttaatgatataatcgaaagtgataaagtcagttta |
52872202 |
T |
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| Q |
101 |
aaacacgtgttccttttatat |
121 |
Q |
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| T |
52872203 |
aaacatatgttccttttatat |
52872223 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 55 - 87
Target Start/End: Complemental strand, 42825189 - 42825157
Alignment:
| Q |
55 |
gataaatttatttaatggtataatcgaaagtga |
87 |
Q |
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| T |
42825189 |
gataaatttatttaatggtataaccgaaagtga |
42825157 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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