View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17734_low_14 (Length: 401)

Name: NF17734_low_14
Description: NF17734
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17734_low_14
NF17734_low_14
[»] scaffold0003 (2 HSPs)
scaffold0003 (18-356)||(41667-42009)
scaffold0003 (30-349)||(35004-35324)
[»] chr6 (3 HSPs)
chr6 (18-356)||(27445349-27445691)
chr6 (29-356)||(20909306-20909632)
chr6 (29-356)||(20923754-20924080)
[»] chr8 (3 HSPs)
chr8 (29-356)||(42312420-42312746)
chr8 (130-166)||(8333302-8333338)
chr8 (130-166)||(15581194-15581230)
[»] chr1 (2 HSPs)
chr1 (48-356)||(41326204-41326511)
chr1 (276-356)||(47246912-47246992)
[»] chr7 (1 HSPs)
chr7 (29-158)||(11504728-11504856)
[»] chr3 (2 HSPs)
chr3 (135-234)||(50717647-50717745)
chr3 (135-234)||(50795103-50795201)
[»] chr5 (1 HSPs)
chr5 (130-166)||(11909949-11909985)


Alignment Details
Target: scaffold0003 (Bit Score: 209; Significance: 1e-114; HSPs: 2)
Name: scaffold0003
Description:

Target: scaffold0003; HSP #1
Raw Score: 209; E-Value: 1e-114
Query Start/End: Original strand, 18 - 356
Target Start/End: Complemental strand, 42009 - 41667
Alignment:
Q  18 caatttttgtttga---ttcaaaaatatcatgtttgctcctatgcacaataagaattctgctaattgaatttactagataattataaaataactcatgtt 114  Q
    ||||||||||||||   ||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| || || |||||||     
T  42009 caatttttgtttgaggattccaaaatatcatgtttgctcctatgcacaataagaattctgctaattgaatttgctagataattatcaactagctcatgta 41910  T
Q  115 gttctgcatttaaaaaggggaagggcactctgaagcagcaattagctaacatgctggtgtttgcatatatttttagttcattcataagtgttatcttact 214  Q
    |||||||||||||||||    |||||| |||||||||||||||||| ||||| |||||||||||||||||||||||||||||  ||||||||||||||||    
T  41909 gttctgcatttaaaaagtaatagggcattctgaagcagcaattagccaacatactggtgtttgcatatatttttagttcatttgtaagtgttatcttact 41810  T
Q  215 attgcttccttttctctccaaacagattttgttccagcagaagacaaa-ttttcatatcagctctattgatgatttttccgaagtaatattttgattttt 313  Q
    ||||||||||||||||||||||||||||||| |||| ||||| | |||  | | || |||| |||||| |||||||||||||||||||||||||||||||    
T  41809 attgcttccttttctctccaaacagattttgctccaacagaaaataaagatgttatgtcagttctattaatgatttttccgaagtaatattttgattttt 41710  T
Q  314 gtaagactttaaatgacatccatccaagcttgagtgatccatc 356  Q
    | ||||||| |||||||||||||||||||||||||||| ||||    
T  41709 ggaagacttaaaatgacatccatccaagcttgagtgattcatc 41667  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0003; HSP #2
Raw Score: 201; E-Value: 1e-109
Query Start/End: Original strand, 30 - 349
Target Start/End: Complemental strand, 35324 - 35004
Alignment:
Q  30 gattcaaaaatatcatgtttgctcctatgcacaataagaattctgctaattgaatttactagataattataaaataactcatgttgttctgcatttaaaa 129  Q
    ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| || ||||||||||  ||||||||||||||    
T  35324 gattccaaaatatcatgtttgctcctatgcacaataagaattctgctaattgaatttgctagataattatcaactaactcatgtatttctgcatttaaaa 35225  T
Q  130 aggggaagggcactctgaagcagcaattagctaacatgctggtgtttgcatatatttttagttcattcataagtgttatcttactattgcttccttttct 229  Q
    ||    ||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||  |||||||||||||||||||||||||||||||    
T  35224 agtaatagggcactctgaagcagcaattagccaacatactggtgtttgcatatatttttagttcatttgtaagtgttatcttactattgcttccttttct 35125  T
Q  230 ctccaaacagattttgttccagcagaagacaaa-ttttcatatcagctctattgatgatttttccgaagtaatattttgatttttgtaagactttaaatg 328  Q
    ||||| |||||||||| |||| ||||| | |||  |   || |||| |||||| |||||||||||||||||||||||||||||||| ||||||| |||||    
T  35124 ctccatacagattttgctccaacagaaaataaagatggtatgtcagttctattaatgatttttccgaagtaatattttgatttttggaagacttaaaatg 35025  T
Q  329 acatccatccaagcttgagtg 349  Q
    |||||||||||||||||||||    
T  35024 acatccatccaagcttgagtg 35004  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 209; Significance: 1e-114; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 209; E-Value: 1e-114
Query Start/End: Original strand, 18 - 356
Target Start/End: Original strand, 27445349 - 27445691
Alignment:
Q  18 caatttttgtttga---ttcaaaaatatcatgtttgctcctatgcacaataagaattctgctaattgaatttactagataattataaaataactcatgtt 114  Q
    ||||||||||||||   ||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| || || |||||||     
T  27445349 caatttttgtttgaggattccaaaatatcatgtttgctcctatgcacaataagaattctgctaattgaatttgctagataattatcaactagctcatgta 27445448  T
Q  115 gttctgcatttaaaaaggggaagggcactctgaagcagcaattagctaacatgctggtgtttgcatatatttttagttcattcataagtgttatcttact 214  Q
    |||||||||||||||||    |||||| |||||||||||||||||| ||||| |||||||||||||||||||||||||||||  ||||||||||||||||    
T  27445449 gttctgcatttaaaaagtaatagggcattctgaagcagcaattagccaacatactggtgtttgcatatatttttagttcatttgtaagtgttatcttact 27445548  T
Q  215 attgcttccttttctctccaaacagattttgttccagcagaagacaaa-ttttcatatcagctctattgatgatttttccgaagtaatattttgattttt 313  Q
    ||||||||||||||||||||||||||||||| |||| ||||| | |||  | | || |||| |||||| |||||||||||||||||||||||||||||||    
T  27445549 attgcttccttttctctccaaacagattttgctccaacagaaaataaagatgttatgtcagttctattaatgatttttccgaagtaatattttgattttt 27445648  T
Q  314 gtaagactttaaatgacatccatccaagcttgagtgatccatc 356  Q
    | ||||||| |||||||||||||||||||||||||||| ||||    
T  27445649 ggaagacttaaaatgacatccatccaagcttgagtgattcatc 27445691  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 144; E-Value: 1e-75
Query Start/End: Original strand, 29 - 356
Target Start/End: Complemental strand, 20909632 - 20909306
Alignment:
Q  29 tgattcaaaaatatcatgtttgctcctatgcacaataagaattctgctaattgaatttactagataattataaaataactcatgttgttctgcatttaaa 128  Q
    |||||| |||| ||||| |||||||||||||||||||||||||   |||||||||||| |||||||||||| || |||||||||| ||| ||||||||||    
T  20909632 tgattccaaaacatcatatttgctcctatgcacaataagaatttccctaattgaatttgctagataattatcaattaactcatgtagttttgcatttaaa 20909533  T
Q  129 aaggggaagggcactctgaagcagcaattagctaacatgctggtgtttgcatatatttttagttcattcataagtgttatcttactattgcttccttttc 228  Q
    | | | || || |||||||||||| |||||||  |||   ||||||||||||||||||||||||||||  ||||||||||||| ||||||||||||||||    
T  20909532 a-gagaaatggaactctgaagcaggaattagcctacacattggtgtttgcatatatttttagttcatttgtaagtgttatcttgctattgcttccttttc 20909434  T
Q  229 tctccaaacagattttgttccagcagaagacaaattttcatatcagctctattgatgatttttccgaagtaatattttgatttttgtaagactttaaatg 328  Q
    ||||||| |||||||||||||||||||| |  ||   ||||||  | |||||| ||||  |||| |||||| |||||| || |||| |||||||||||||    
T  20909433 tctccaatcagattttgttccagcagaaaatgaagaatcatatttgttctattaatgagctttctgaagtagtatttttatatttggaagactttaaatg 20909334  T
Q  329 acatccatccaagcttgagtgatccatc 356  Q
    | ||||||||||||||||||||| ||||    
T  20909333 aaatccatccaagcttgagtgattcatc 20909306  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 144; E-Value: 1e-75
Query Start/End: Original strand, 29 - 356
Target Start/End: Complemental strand, 20924080 - 20923754
Alignment:
Q  29 tgattcaaaaatatcatgtttgctcctatgcacaataagaattctgctaattgaatttactagataattataaaataactcatgttgttctgcatttaaa 128  Q
    |||||| |||| ||||| |||||||||||||||||||||||||   |||||||||||| |||||||||||| || |||||||||| ||| ||||||||||    
T  20924080 tgattccaaaacatcatatttgctcctatgcacaataagaatttccctaattgaatttgctagataattatcaattaactcatgtagttttgcatttaaa 20923981  T
Q  129 aaggggaagggcactctgaagcagcaattagctaacatgctggtgtttgcatatatttttagttcattcataagtgttatcttactattgcttccttttc 228  Q
    | | | || || |||||||||||| |||||||  |||   ||||||||||||||||||||||||||||  ||||||||||||| ||||||||||||||||    
T  20923980 a-gagaaatggaactctgaagcaggaattagcctacacattggtgtttgcatatatttttagttcatttgtaagtgttatcttgctattgcttccttttc 20923882  T
Q  229 tctccaaacagattttgttccagcagaagacaaattttcatatcagctctattgatgatttttccgaagtaatattttgatttttgtaagactttaaatg 328  Q
    ||||||| |||||||||||||||||||| |  ||   ||||||  | |||||| ||||  |||| |||||| |||||| || |||| |||||||||||||    
T  20923881 tctccaatcagattttgttccagcagaaaatgaagaatcatatttgttctattaatgagctttctgaagtagtatttttatatttggaagactttaaatg 20923782  T
Q  329 acatccatccaagcttgagtgatccatc 356  Q
    | ||||||||||||||||||||| ||||    
T  20923781 aaatccatccaagcttgagtgattcatc 20923754  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 140; Significance: 3e-73; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 140; E-Value: 3e-73
Query Start/End: Original strand, 29 - 356
Target Start/End: Complemental strand, 42312746 - 42312420
Alignment:
Q  29 tgattcaaaaatatcatgtttgctcctatgcacaataagaattctgctaattgaatttactagataattataaaataactcatgttgttctgcatttaaa 128  Q
    |||||| |||| |||| ||||||||||||||||||||||||||   |||||||||||| |||||||||||| || |||||||||| ||| ||||||||||    
T  42312746 tgattccaaaacatcacgtttgctcctatgcacaataagaatttccctaattgaatttgctagataattatcaattaactcatgtagttttgcatttaaa 42312647  T
Q  129 aaggggaagggcactctgaagcagcaattagctaacatgctggtgtttgcatatatttttagttcattcataagtgttatcttactattgcttccttttc 228  Q
    | | | || || ||| |||||||| |||||||  |||   |||||||||| |||||||||||||||||  ||||||||||||||||||||||||||||||    
T  42312646 a-gagaaatggaactatgaagcagaaattagcctacacattggtgtttgcgtatatttttagttcatttgtaagtgttatcttactattgcttccttttc 42312548  T
Q  229 tctccaaacagattttgttccagcagaagacaaattttcatatcagctctattgatgatttttccgaagtaatattttgatttttgtaagactttaaatg 328  Q
    ||||||| |||||||||||| ||||||| |  ||   |||||| || |||||| ||||  ||||  ||||| |||||| ||||||| |||||||||||||    
T  42312547 tctccaatcagattttgttctagcagaaaatgaagaatcatattagttctattaatgagctttctaaagtagtatttttatttttggaagactttaaatg 42312448  T
Q  329 acatccatccaagcttgagtgatccatc 356  Q
    | ||||||||||||||||||||| ||||    
T  42312447 aaatccatccaagcttgagtgattcatc 42312420  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 130 - 166
Target Start/End: Original strand, 8333302 - 8333338
Alignment:
Q  130 aggggaagggcactctgaagcagcaattagctaacat 166  Q
    |||| |||||||||||||||||||||||||| |||||    
T  8333302 agggaaagggcactctgaagcagcaattagccaacat 8333338  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 130 - 166
Target Start/End: Complemental strand, 15581230 - 15581194
Alignment:
Q  130 aggggaagggcactctgaagcagcaattagctaacat 166  Q
    |||| ||||| ||||||||||||||||||||||||||    
T  15581230 agggaaagggtactctgaagcagcaattagctaacat 15581194  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 121; Significance: 7e-62; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 121; E-Value: 7e-62
Query Start/End: Original strand, 48 - 356
Target Start/End: Complemental strand, 41326511 - 41326204
Alignment:
Q  48 ttgctcctatgcacaataagaattctgctaattgaatttactagataattataaaataactcatgttgttctgcatttaaaaaggggaagggcactctga 147  Q
    ||||||||||||||||||||||||   |||||||||||| |||||||||||| || |||||||||| ||| ||||||||||| | | || || |||||||    
T  41326511 ttgctcctatgcacaataagaatttccctaattgaatttgctagataattatcaattaactcatgtagttttgcatttaaaa-gagaaatggaactctga 41326413  T
Q  148 agcagcaattagctaacatgctggtgtttgcatatatttttagttcattcataagtgttatcttactattgcttccttttctctccaaacagattttgtt 247  Q
    || || ||||  |  | |   |||||||||| |||||||||||||||||  ||||||||||||||||||||||||||||||||||||| |||||||||||    
T  41326412 agtaggaatttccctatacattggtgtttgcgtatatttttagttcatttgtaagtgttatcttactattgcttccttttctctccaatcagattttgtt 41326313  T
Q  248 ccagcagaagacaaattttcatatcagctctattgatgatttttccgaagtaatattttgatttttgtaagactttaaatgacatccatccaagcttgag 347  Q
    ||||||||| |  ||   |||||| || |||||| || |  |||| |||||| |||||| ||||||| |||| ||||||||| |||||||||||||||||    
T  41326312 ccagcagaaaatgaagaatcatattagttctattaataagctttctgaagtagtatttttatttttggaagaatttaaatgaaatccatccaagcttgag 41326213  T
Q  348 tgatccatc 356  Q
    |||| ||||    
T  41326212 tgattcatc 41326204  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 276 - 356
Target Start/End: Original strand, 47246912 - 47246992
Alignment:
Q  276 tctattgatgatttttccgaagtaatattttgatttttgtaagactttaaatgacatccatccaagcttgagtgatccatc 356  Q
    |||||| ||||  |||| |||||| |||||| ||||||| ||| |||||||||| ||||||||||||||||||||| ||||    
T  47246912 tctattaatgagctttctgaagtagtatttttatttttggaaggctttaaatgaaatccatccaagcttgagtgattcatc 47246992  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 50; Significance: 2e-19; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 29 - 158
Target Start/End: Original strand, 11504728 - 11504856
Alignment:
Q  29 tgattcaaaaatatcatgtttgctcctatgcacaataagaattctgctaattgaatttactagataattataaaataactcatgttgttctgcatttaaa 128  Q
    |||||| |||| || |||||| |||||||||||||||||||||   | ||||||||||  ||||||||||| || |||||||||| ||| | ||||| ||    
T  11504728 tgattctaaaacattatgtttactcctatgcacaataagaatttcaccaattgaatttggtagataattatcaactaactcatgtagtttttcattt-aa 11504826  T
Q  129 aaggggaagggcactctgaagcagcaatta 158  Q
    ||||| || |||||||| ||||||||||||    
T  11504827 aagggaaatggcactctaaagcagcaatta 11504856  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 36; Significance: 0.00000000004; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 135 - 234
Target Start/End: Original strand, 50717647 - 50717745
Alignment:
Q  135 aagggcactctgaagcagcaattagctaacatgctggtgtttgcatatatttttagttcattcataagtgttatcttactattgcttccttttctctcca 234  Q
    |||||||| | ||| || ||||| || |||||  |||||||||||||| |||||||||| ||  |||||||||||||| ||||| ||||||||| |||||    
T  50717647 aagggcacaccgaatcatcaattcgccaacatattggtgtttgcatatttttttagttctttg-taagtgttatcttattattgattccttttcactcca 50717745  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 135 - 234
Target Start/End: Complemental strand, 50795201 - 50795103
Alignment:
Q  135 aagggcactctgaagcagcaattagctaacatgctggtgtttgcatatatttttagttcattcataagtgttatcttactattgcttccttttctctcca 234  Q
    |||||||| | ||| || ||||| || |||||  |||||||||||||| |||||||||| ||  |||||||||||||| ||||| ||||||||| |||||    
T  50795201 aagggcacaccgaatcatcaattcgccaacatattggtgtttgcatatttttttagttctttg-taagtgttatcttattattgattccttttcactcca 50795103  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 130 - 166
Target Start/End: Complemental strand, 11909985 - 11909949
Alignment:
Q  130 aggggaagggcactctgaagcagcaattagctaacat 166  Q
    |||| |||||||||||||||||||||||||| |||||    
T  11909985 agggaaagggcactctgaagcagcaattagccaacat 11909949  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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