View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17734_low_19 (Length: 368)
Name: NF17734_low_19
Description: NF17734
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17734_low_19 |
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Alignment Details
Target: chr1 (Bit Score: 264; Significance: 1e-147; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 264; E-Value: 1e-147
Query Start/End: Original strand, 1 - 349
Target Start/End: Original strand, 2598281 - 2598647
Alignment:
| Q |
1 |
atgggctaggtcatgtactaaaggatatatcaagaaatatggaatatcttcaatccaaacaccttccccatttaaaatagcatgcttacctaaaaaatgc |
100 |
Q |
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| T |
2598281 |
atgggctaggtcatgtagtaaaggatgtatcaagaaatatgaaatatcttcaatccaaacatcttccccatttaaaatagcatgcttacctaaaaaatgc |
2598380 |
T |
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| Q |
101 |
gctaatttgttgctgtttctactttctacgggaatgcctatactgatctacttttaatatttacgtttgcacaaaacctgttcagctgca---------- |
190 |
Q |
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| T |
2598381 |
gctaatttgttgctgtttctactttctacggcaatgcctatactgatctacttttaatatttacgtttgcacaaaacctgttcagctgcaaagtgaatcc |
2598480 |
T |
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| Q |
191 |
--------aagccaatgcttccgcgtcaaaaggttcttcattactttcatgatttcaattgtgctgaacattagagtcactgaggatgcaagctatgccc |
282 |
Q |
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| T |
2598481 |
ctagcgtgaagccaatgcttccgcgtcaaaaggttcttcattactttcatgattccaattgtgctgaacattaaagtcactgaggatgcaagctatgccc |
2598580 |
T |
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| Q |
283 |
gaaggccatttgtgtttgtcgctgcgttgctgttcaatctgtaaacgttaacatgggagggttccag |
349 |
Q |
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| T |
2598581 |
gaaagccatttgtgtttgtcgctatgttgctgttcaatttgtaaacgttaacatgggagggttccag |
2598647 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 1 - 72
Target Start/End: Original strand, 2582975 - 2583046
Alignment:
| Q |
1 |
atgggctaggtcatgtactaaaggatatatcaagaaatatggaatatcttcaatccaaacaccttccccatt |
72 |
Q |
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|||||||||||||||||| ||||||| ||| ||||||||||||||||||||||||||||||||||||||||| |
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| T |
2582975 |
atgggctaggtcatgtaccaaaggatgtataaagaaatatggaatatcttcaatccaaacaccttccccatt |
2583046 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 57 - 121
Target Start/End: Original strand, 2583772 - 2583836
Alignment:
| Q |
57 |
aaacaccttccccatttaaaatagcatgcttacctaaaaaatgcgctaatttgttgctgtttcta |
121 |
Q |
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||||||||||||||||||||||||||| |||| |||||||||| ||||||| |||| |||||||| |
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| T |
2583772 |
aaacaccttccccatttaaaatagcatacttagctaaaaaatgggctaattggttgttgtttcta |
2583836 |
T |
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