View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17734_low_2 (Length: 698)
Name: NF17734_low_2
Description: NF17734
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17734_low_2 |
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Alignment Details
Target: chr5 (Bit Score: 369; Significance: 0; HSPs: 5)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 369; E-Value: 0
Query Start/End: Original strand, 224 - 671
Target Start/End: Complemental strand, 38539072 - 38538626
Alignment:
| Q |
224 |
gacttttgatcttatcataactaacatgtatttagnnnnnnnnngataatcattttatcacatacaagagtgtggtgacatgtcctcaaatattgttttt |
323 |
Q |
| |
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|||||||||||||||||||||||||||||||||| |||||||||||||||| |||||||||||||||||||| ||||||||||| ||||| |
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| T |
38539072 |
gacttttgatcttatcataactaacatgtattta-aaaaaaaaagataatcattttatcaaatacaagagtgtggtgacatatcctcaaatatatttttt |
38538974 |
T |
|
| Q |
324 |
tctcattagaaaattggacagaaagatttgtttggagtgtaaggtcatacttgaagagaacttgaccatccaacatagagtatctattatagatgcaaga |
423 |
Q |
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||||||||||||||||||||||||||||| ||||||||||||| ||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38538973 |
tctcattagaaaattggacagaaagatttttttggagtgtaagatcatacttggagagaacttgaccatccaacatagagtatctattatagatgcaaga |
38538874 |
T |
|
| Q |
424 |
gtcaagaggagaacgaaaaggataagacatgtagaggctccaagatcaaatggtggcattttaagagtgaaaacttatgataaccataaacgcaatgttt |
523 |
Q |
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||||||||||||||||||||||||||| | ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38538873 |
gtcaagaggagaacgaaaaggataagataagtagaggctccaagatcaagtggtggcattttaagagtgaaaacttatgataaccataaacgcaatgttt |
38538774 |
T |
|
| Q |
524 |
taaagaacatttgatacaacaaaatatatctcgaaaaattccaacttttaccaagattgatatagtgacaacttacaccaatatgtcaccattatatttc |
623 |
Q |
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| T |
38538773 |
taaagaacatttgatacaacaaagtatatctcgaaaaattccaacttttaccaagattgatatagtgacaacttacaccaatatgtcaccattatatttc |
38538674 |
T |
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| Q |
624 |
ttataattaattggcctgtccacacttttaatcatatcacccttaaag |
671 |
Q |
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| T |
38538673 |
ttataattaattggcctgtccacacttttaatcatatcacccttaaag |
38538626 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 67; E-Value: 2e-29
Query Start/End: Original strand, 12 - 137
Target Start/End: Complemental strand, 38539338 - 38539212
Alignment:
| Q |
12 |
aaaaatattgatggaaaactgttgagaaactaaaaatttaataaaaccnnnnnnnn-aaaggatctaataaaacttttagtaagactaaaacaaaaaatt |
110 |
Q |
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|||||||||||||||||||||||||| |||||||||| |||||||||| ||||||||||||||||||||||| |||| |||||||||||||| |
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| T |
38539338 |
aaaaatattgatggaaaactgttgaggaactaaaaatctaataaaacctttttttttaaaggatctaataaaacttttagaaagattaaaacaaaaaatt |
38539239 |
T |
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| Q |
111 |
tctaaatgggcatgtagagagtgtata |
137 |
Q |
| |
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| T |
38539238 |
tataaataggcatgcagagagtgtata |
38539212 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 158 - 199
Target Start/End: Complemental strand, 38539214 - 38539173
Alignment:
| Q |
158 |
ataaacaggggatattcccccaaagaggtgaatacaaagagt |
199 |
Q |
| |
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| T |
38539214 |
ataaacaggggatattcccccaaagaggtgaatacaaagagt |
38539173 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 278 - 404
Target Start/End: Complemental strand, 1289827 - 1289699
Alignment:
| Q |
278 |
ttatcacatacaagagtgtggtgacatgtcctcaaatat-tgttt-tttctcattagaaaattggacagaaagatttgtttggagtgtaaggtcatactt |
375 |
Q |
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||||||| |||||||||| ||| ||||| |||| |||| | ||| ||||| ||||| |||| ||||| ||||||||||| || ||||| ||||||| | |
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| T |
1289827 |
ttatcacttacaagagtgaggtctcatgttctcagatatatatttctttcttattaggaaatccgacaggaagatttgtttagactgtaaagtcatacct |
1289728 |
T |
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| Q |
376 |
gaagagaacttgaccatccaacatagagt |
404 |
Q |
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| T |
1289727 |
ggagagagcttaactacccaacatagagt |
1289699 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 289 - 317
Target Start/End: Complemental strand, 38539178 - 38539150
Alignment:
| Q |
289 |
aagagtgtggtgacatgtcctcaaatatt |
317 |
Q |
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| T |
38539178 |
aagagtgtggtgacatgtcctcaaatatt |
38539150 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 48; Significance: 5e-18; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 48; E-Value: 5e-18
Query Start/End: Original strand, 275 - 418
Target Start/End: Complemental strand, 35671782 - 35671639
Alignment:
| Q |
275 |
attttatcacatacaagagtgtggtgacatgtcctcaaatattgttttttctcattagaaaattggacagaaagatttgtttggagtgtaaggtcatact |
374 |
Q |
| |
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|||||||||||||||| |||| |||||||||| |||| ||| || ||||| ||| |||||||||||| ||| |||| ||||| ||||| ||||||| |
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| T |
35671782 |
attttatcacatacaaaagtggggtgacatgttctcatataaatttatttcttatttgaaaattggacataaaattttggttggattgtaaagtcataca |
35671683 |
T |
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| Q |
375 |
tgaagagaacttgaccatccaacatagagtatctattatagatg |
418 |
Q |
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| T |
35671682 |
tgaagagggcttgactaaccaacataaagtattgattatagatg |
35671639 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 39; Significance: 0.000000000001; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 278 - 404
Target Start/End: Original strand, 6080433 - 6080559
Alignment:
| Q |
278 |
ttatcacatacaagagtgtggtgacatgtcctcaaatattgttttttctcattagaaaattggacagaaagatttgtttggagtgtaaggtcatacttga |
377 |
Q |
| |
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||||||| |||||||||| ||| ||||| |||||||| || ||||| ||||| |||| ||||| |||||||||||||| ||||| ||||||| || |
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| T |
6080433 |
ttatcacttacaagagtgaggtctcatgttctcaaatagatttatttcttattaggaaatccgacaggaagatttgtttggactgtaaagtcatacctgg |
6080532 |
T |
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| Q |
378 |
agagaacttgaccatccaacatagagt |
404 |
Q |
| |
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||||| ||| || | |||||||||||| |
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| T |
6080533 |
agagagcttaactacccaacatagagt |
6080559 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 35; Significance: 0.0000000003; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 278 - 404
Target Start/End: Complemental strand, 51450001 - 51449875
Alignment:
| Q |
278 |
ttatcacatacaagagtgtggtgacatgtcctcaaatattgttttttctcattagaaaattggacagaaagatttgtttggagtgtaaggtcatacttga |
377 |
Q |
| |
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||||||| |||||||||| ||| ||||| |||| ||| || ||||| ||||| |||| ||||| |||||||||||||| ||||| ||||||| || |
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| T |
51450001 |
ttatcacttacaagagtggggtctcatgttctcagatagatttctttcttattaggaaatccgacaggaagatttgtttggactgtaaagtcatacctgg |
51449902 |
T |
|
| Q |
378 |
agagaacttgaccatccaacatagagt |
404 |
Q |
| |
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||||| ||| || | |||||||||||| |
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| T |
51449901 |
agagagcttaactacccaacatagagt |
51449875 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 35; Significance: 0.0000000003; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 278 - 404
Target Start/End: Complemental strand, 49349709 - 49349583
Alignment:
| Q |
278 |
ttatcacatacaagagtgtggtgacatgtcctcaaatattgttttttctcattagaaaattggacagaaagatttgtttggagtgtaaggtcatacttga |
377 |
Q |
| |
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||||||| |||||||||| ||| ||||| |||| ||| || ||||| ||||| |||| | ||| |||||||||||||| ||||| ||||||| || |
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| T |
49349709 |
ttatcacttacaagagtggggtctcatgttctcagatagatttctttcttattaggaaatccgtcaggaagatttgtttggactgtaaagtcatacctgg |
49349610 |
T |
|
| Q |
378 |
agagaacttgaccatccaacatagagt |
404 |
Q |
| |
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||||| ||| || |||||||||||||| |
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|
| T |
49349609 |
agagagcttaactatccaacatagagt |
49349583 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 31; Significance: 0.00000006; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 274 - 404
Target Start/End: Original strand, 8178773 - 8178903
Alignment:
| Q |
274 |
cattttatcacatacaagagtgtggtgacatgtcctcaaatattgttttttctcattagaaaattggacagaaagatttgtttggagtgtaaggtcatac |
373 |
Q |
| |
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||||||||||| |||||||||| ||| ||||| |||| ||| || ||||| ||||| ||| ||||| |||||||||||||| ||||| ||||||| |
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| T |
8178773 |
cattttatcacttacaagagtggggtctcatgttctcagatagatttctttcttattaggaaagccgacaggaagatttgtttggactgtaaagtcatac |
8178872 |
T |
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| Q |
374 |
ttgaagagaacttgaccatccaacatagagt |
404 |
Q |
| |
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|| ||||| || || | |||||||||||| |
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| T |
8178873 |
ctggagagagtttaactacccaacatagagt |
8178903 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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