View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17734_low_27 (Length: 296)
Name: NF17734_low_27
Description: NF17734
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17734_low_27 |
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Alignment Details
Target: chr6 (Bit Score: 136; Significance: 6e-71; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 136; E-Value: 6e-71
Query Start/End: Original strand, 10 - 173
Target Start/End: Complemental strand, 15297756 - 15297593
Alignment:
| Q |
10 |
ttataaatgatatgcctttataatgtgattttatacggaatgaagaattgaatacaaaatgcataaaaattccaatgcccctctaattgaaaatgtcacg |
109 |
Q |
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| T |
15297756 |
ttataaatgatatgcctttataatgtgattttatacagaatgaagaattgaatacaaaatgcataaaaattccaatgcccatctatttcaaaatgtcatg |
15297657 |
T |
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| Q |
110 |
gtgagaaaacctctcatgcttacaaaccaatatgcaaaatgtaagttatagggcaacgaatata |
173 |
Q |
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| T |
15297656 |
gtgagaaaacctctcatgcttacaaaccaatatgcaaaatgtaagttacagtgcaacgaatata |
15297593 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 212 - 296
Target Start/End: Complemental strand, 15297556 - 15297473
Alignment:
| Q |
212 |
aaaataacttgagaaacttcatataattaaggggagggtta----gaatgtaatttactgtatcatttacaatagttttggttgaagtt |
296 |
Q |
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| T |
15297556 |
aaaataacttgagaaacttcatata-----ggggagggttaattagaatgtaatttactgtatcatttacaatagttttggttgaagtt |
15297473 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 132; Significance: 1e-68; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 132; E-Value: 1e-68
Query Start/End: Original strand, 10 - 173
Target Start/End: Complemental strand, 37338941 - 37338778
Alignment:
| Q |
10 |
ttataaatgatatgcctttataatgtgattttatacggaatgaagaattgaatacaaaatgcataaaaattccaatgcccctctaattgaaaatgtcacg |
109 |
Q |
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| T |
37338941 |
ttataaatgatatgcctttataatgtgattttatacagaatgaagaattgaatacaacatgaataaaaattccaatgcccctctaattcaaaatgtcatg |
37338842 |
T |
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| Q |
110 |
gtgagaaaacctctcatgcttacaaaccaatatgcaaaatgtaagttatagggcaacgaatata |
173 |
Q |
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| T |
37338841 |
gtaagaaaacctctcatgcttacaaaccaatatgcaaaatgtaagttacatggcaacgaatata |
37338778 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 208 - 296
Target Start/End: Complemental strand, 37338744 - 37338661
Alignment:
| Q |
208 |
gctgaaaataacttgagaaacttcatataattaaggggagggttagaatgtaatttactgtatcatttacaatagttttggttgaagtt |
296 |
Q |
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| T |
37338744 |
gctgaaaataacttgagaaacttcatata-----ggggagggttagaatgtaatttactatatcatttacaatagttttggttgaagtt |
37338661 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 108; Significance: 3e-54; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 108; E-Value: 3e-54
Query Start/End: Original strand, 10 - 125
Target Start/End: Original strand, 47967119 - 47967234
Alignment:
| Q |
10 |
ttataaatgatatgcctttataatgtgattttatacggaatgaagaattgaatacaaaatgcataaaaattccaatgcccctctaattgaaaatgtcacg |
109 |
Q |
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| T |
47967119 |
ttataaatgatatgcctttataatgtgattttatagagaatgaagaattgaatacaaaatgcataaaaattccaatgcccctctaattgaaaatgtcacg |
47967218 |
T |
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| Q |
110 |
gtgagaaaacctctca |
125 |
Q |
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| T |
47967219 |
gtgagaaaacctctca |
47967234 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 84; E-Value: 6e-40
Query Start/End: Original strand, 208 - 295
Target Start/End: Original strand, 47967278 - 47967365
Alignment:
| Q |
208 |
gctgaaaataacttgagaaacttcatataattaaggggagggttagaatgtaatttactgtatcatttacaatagttttggttgaagt |
295 |
Q |
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| T |
47967278 |
gctgaaaataacctgagaaacttcatataattaaggggagggttagaatgtaatttactgtatcatttacaatagttttggttgaagt |
47967365 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 48; Significance: 2e-18; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 62 - 149
Target Start/End: Original strand, 27264427 - 27264512
Alignment:
| Q |
62 |
tacaaaatgcataaaaattccaatgcccctctaattgaaaatgtcacggtgagaaaacctctcatgcttacaaaccaatatgcaaaat |
149 |
Q |
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| T |
27264427 |
tacaaaatgcataaaaactccaatgccctac-aactgaaaatgtca-ggtgagaaaacctcttatgcttacaaaccaatattcaaaat |
27264512 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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